Note: iteres used many library functions in UCSC kent source and samtools, a customized Kent source library and samtools library were included in iteres code for easy compile.
Get the source and compile
Users are encouraged to use git to get the latest source code of iteres :
$ git clone git://github.com/lidaof/iteres.git $ cd iteres # then run a make command here $ make # the binary iteres file will be generated # (optional) you can put the iteres binary at you $PATH directory for easy use
Support Files
Human
Repeat size file: here (length of consensus sequence of repeat subfamily)
[hg19]Repeat annotation: download from UCSC
[hg19]Chromosome size file: Full Lite (without supercontigs)
[hg38]Repeat annotation: download from UCSC
[hg38]Chromosome size file: Full Lite (without supercontigs)