Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
MER4C | LTR | 1205 | 2.92E-06 | 4.383e-05 | H1ES |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 396424 | 2765 | 0.01395 |
Found 20 MER4C transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr15 | 89542972 | 89543166 | - | 0.00004574 | chr15:89542232-89543644 | Epigenome browser | Genome browser |
chr5 | 1107253 | 1107434 | + | 0.02539 | chr5:1098753-1111557 | Epigenome browser | Genome browser |
chr3 | 184629177 | 184629418 | - | 0.0162 | chr3:184627591-184629463 | Epigenome browser | Genome browser |
chr15 | 89542177 | 89542263 | - | 0.03291 | chr15:89542232-89543644 | Epigenome browser | Genome browser |
chr15 | 73679674 | 73680211 | - | 0.004839 | chr15:73678491-73679846 | Epigenome browser | Genome browser |
chr17 | 71309597 | 71310001 | - | 0.001584 | chr17:71308340-71309830 | Epigenome browser | Genome browser |
chr6 | 155464962 | 155465408 | + | 0.00000265 | chr6:155462733-155465048 | Epigenome browser | Genome browser |
chr5 | 153547352 | 153547525 | - | 0.0005984 | chr5:153546994-153548820 | Epigenome browser | Genome browser |
chr8 | 23418267 | 23418730 | - | 0.00007283 | chr8:23417441-23418288 | Epigenome browser | Genome browser |
chr19 | 10063002 | 10063313 | - | 0.002295 | chr19:10062414-10064304 | Epigenome browser | Genome browser |
chr6 | 3166847 | 3166995 | + | 0.00007004 | chr6:3166854-3167583 | Epigenome browser | Genome browser |
chr11 | 9556001 | 9556157 | + | 0.02695 | chr11:9555953-9556683 | Epigenome browser | Genome browser |
chrX | 47161816 | 47162198 | + | 0.008803 | chrX:47161936-47162588 | Epigenome browser | Genome browser |
chr10 | 30842387 | 30842881 | + | 0.001473 | chr10:30842642-30843580 | Epigenome browser | Genome browser |
chr12 | 47778960 | 47779361 | + | 0.01932 | chr12:47778323-47779191 | Epigenome browser | Genome browser |
chr10 | 29877557 | 29878023 | + | 0.03588 | chr10:29877962-29879168 | Epigenome browser | Genome browser |
chr6 | 159275298 | 159275755 | - | 0.04212 | chr6:159274698-159276113 | Epigenome browser | Genome browser |
chr7 | 130775603 | 130776084 | + | 0.008162 | chr7:130775912-130777000 | Epigenome browser | Genome browser |
chr1 | 233033086 | 233033712 | + | 0.007296 | chr1:233033393-233034322 | Epigenome browser | Genome browser |
chr8 | 92072106 | 92072560 | - | 0.00756 | chr8:92071948-92072484 | Epigenome browser | Genome browser |