Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
MER31A | LTR | 1343 | 4.41E-05 | 7.354e-06 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 434333 | 3293 | 0.01516 |
Found 33 MER31A transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr3 | 37978493 | 37978715 | - | 0.03044 | chr3:37976012-37979775 | Epigenome browser | Genome browser |
chr12 | 95539094 | 95539459 | + | 0.0003157 | chr12:95538861-95540142 | Epigenome browser | Genome browser |
chr13 | 24606104 | 24606550 | + | 0.001572 | chr13:24606202-24608291 | Epigenome browser | Genome browser |
chr16 | 84536913 | 84537193 | + | 0.001346 | chr16:84535979-84538238 | Epigenome browser | Genome browser |
chr21 | 35444242 | 35444638 | - | 0.0009322 | chr21:35444421-35445673 | Epigenome browser | Genome browser |
chr12 | 95539750 | 95539825 | + | 0.00919 | chr12:95538861-95540142 | Epigenome browser | Genome browser |
chr1 | 228682734 | 228683177 | - | 0.001358 | chr1:228682398-228683442 | Epigenome browser | Genome browser |
chr7 | 75923498 | 75923589 | - | 0.002077 | chr7:75921818-75923582 | Epigenome browser | Genome browser |
chr22 | 41696782 | 41697104 | + | 0.00002236 | chr22:41696411-41697189 | Epigenome browser | Genome browser |
chr1 | 228351393 | 228351849 | + | 0.000495 | chr1:228349566-228352558 | Epigenome browser | Genome browser |
chr7 | 157330211 | 157330587 | + | 0.001968 | chr7:157329961-157330992 | Epigenome browser | Genome browser |
chr3 | 171894535 | 171895026 | - | 0.004905 | chr3:171893502-171895393 | Epigenome browser | Genome browser |
chr1 | 228082873 | 228083251 | - | 0.04506 | chr1:228079927-228085438 | Epigenome browser | Genome browser |
chr5 | 38831460 | 38831908 | + | 0.000002486 | chr5:38829412-38832974 | Epigenome browser | Genome browser |
chr13 | 24391498 | 24391734 | + | 0.04884 | chr13:24390667-24392140 | Epigenome browser | Genome browser |
chr10 | 95197675 | 95198125 | + | 0.000000003943 | chr10:95197303-95208399 | Epigenome browser | Genome browser |
chr9 | 133838751 | 133839163 | - | 0.007452 | chr9:133837289-133838885 | Epigenome browser | Genome browser |
chr1 | 223887322 | 223887795 | + | 0.04352 | chr1:223887239-223888949 | Epigenome browser | Genome browser |
chr7 | 75922836 | 75923218 | - | 0.006312 | chr7:75921818-75923582 | Epigenome browser | Genome browser |
chr12 | 27705618 | 27706043 | - | 0.000002154 | chr12:27703703-27709217 | Epigenome browser | Genome browser |
chr6 | 2982645 | 2983059 | + | 0.02464 | chr6:2981193-2983595 | Epigenome browser | Genome browser |
chr21 | 35288577 | 35289055 | - | 0.002504 | chr21:35288299-35288989 | Epigenome browser | Genome browser |
chr1 | 204850854 | 204851338 | + | 0.0007948 | chr1:204849491-204851966 | Epigenome browser | Genome browser |
chr2 | 129737575 | 129738097 | - | 0.03567 | chr2:129737969-129738569 | Epigenome browser | Genome browser |
chr12 | 76284918 | 76285404 | + | 0.03319 | chr12:76285253-76286049 | Epigenome browser | Genome browser |
chr2 | 159956044 | 159956492 | + | 0.03363 | chr2:159955416-159956341 | Epigenome browser | Genome browser |
chr10 | 121428283 | 121428728 | - | 0.000002159 | chr10:121427456-121432684 | Epigenome browser | Genome browser |
chr19 | 36622666 | 36623095 | - | 0.001331 | chr19:36622643-36623358 | Epigenome browser | Genome browser |
chr6 | 139139695 | 139140142 | - | 0.000005556 | chr6:139138885-139140740 | Epigenome browser | Genome browser |
chr22 | 29139034 | 29139466 | - | 0.00001081 | chr22:29138763-29139740 | Epigenome browser | Genome browser |
chr7 | 157330958 | 157331083 | + | 0.0007796 | chr7:157329961-157330992 | Epigenome browser | Genome browser |
chr14 | 104179198 | 104179647 | + | 0.0000364 | chr14:104171339-104181137 | Epigenome browser | Genome browser |
chr16 | 67047070 | 67047148 | + | 0.01063 | chr16:67046925-67047981 | Epigenome browser | Genome browser |