Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR9B | LTR | 752 | 1.39E-07 | 7.272e-06 | H1ES |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 301243 | 4513 | 0.02996 |
Found 20 LTR9B transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr22 | 24903502 | 24904021 | + | 0.03284 | chr22:24902677-24903802 | Epigenome browser | Genome browser |
chr5 | 157392907 | 157393524 | + | 0.0000002941 | chr5:157393225-157394843 | Epigenome browser | Genome browser |
chr10 | 34472274 | 34472851 | + | 0.000005953 | chr10:34471985-34473614 | Epigenome browser | Genome browser |
chr6 | 168609451 | 168609975 | + | 0.00003035 | chr6:168609763-168611968 | Epigenome browser | Genome browser |
chr14 | 21776725 | 21777364 | - | 0.007324 | chr14:21777269-21778047 | Epigenome browser | Genome browser |
chr22 | 26016026 | 26016570 | - | 0.03169 | chr22:26015398-26016062 | Epigenome browser | Genome browser |
chr17 | 12125538 | 12125751 | - | 0.03698 | chr17:12124980-12126320 | Epigenome browser | Genome browser |
chr4 | 110307909 | 110308398 | - | 0.003709 | chr4:110308160-110308909 | Epigenome browser | Genome browser |
chr11 | 8722629 | 8723210 | + | 0.01232 | chr11:8723077-8724772 | Epigenome browser | Genome browser |
chr3 | 138055208 | 138055813 | - | 0.000001192 | chr3:138055283-138055948 | Epigenome browser | Genome browser |
chr19 | 28937315 | 28937933 | + | 0.02158 | chr19:28937114-28938054 | Epigenome browser | Genome browser |
chr2 | 190983857 | 190984456 | - | 0.00001209 | chr2:190984036-190985066 | Epigenome browser | Genome browser |
chr6 | 35733162 | 35733217 | - | 0.009698 | chr6:35732613-35733179 | Epigenome browser | Genome browser |
chr4 | 8053320 | 8053895 | + | 0.02576 | chr4:8053480-8054892 | Epigenome browser | Genome browser |
chr15 | 89529083 | 89529703 | - | 0.0002353 | chr15:89529464-89530137 | Epigenome browser | Genome browser |
chr16 | 60251493 | 60252114 | - | 0.0484 | chr16:60251407-60252057 | Epigenome browser | Genome browser |
chr17 | 6340699 | 6341329 | + | 0.02454 | chr17:6339923-6340716 | Epigenome browser | Genome browser |
chr5 | 12661451 | 12661846 | - | 0.026 | chr5:12661588-12662596 | Epigenome browser | Genome browser |
chr5 | 32500229 | 32500822 | + | 0.000004192 | chr5:32500817-32501607 | Epigenome browser | Genome browser |
chr3 | 142585546 | 142586175 | + | 0.002102 | chr3:142584885-142586169 | Epigenome browser | Genome browser |