Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR25 | LTR | 276 | 1.59E-10 | 7.829e-11 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 124915 | 1002 | 0.01604 |
Found 3 LTR25 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chrX | 79678749 | 79679540 | - | 0.03044 | chrX:79678880-79680070 | Epigenome browser | Genome browser |
| chr1 | 155615242 | 155616065 | - | 0.0002681 | chr1:155613943-155618055 | Epigenome browser | Genome browser |
| chr4 | 67440414 | 67441213 | + | 0.000002041 | chr4:67440182-67440864 | Epigenome browser | Genome browser |