Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR18A | LTR | 258 | 1.02E-06 | 1.391e-07 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERVL | 79587 | 1225 | 0.03078 |
Found 6 LTR18A transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr2 | 28887589 | 28887674 | + | 0.0003922 | chr2:28886555-28891692 | Epigenome browser | Genome browser |
| chr4 | 4258740 | 4258935 | - | 0.0000008808 | chr4:4258244-4259348 | Epigenome browser | Genome browser |
| chr2 | 70428745 | 70429039 | + | 0.02172 | chr2:70428615-70429883 | Epigenome browser | Genome browser |
| chr21 | 29768729 | 29769148 | + | 0.000008224 | chr21:29768453-29769430 | Epigenome browser | Genome browser |
| chr12 | 98813358 | 98813687 | + | 0.005032 | chr12:98810621-98815144 | Epigenome browser | Genome browser |
| chr8 | 124729974 | 124730339 | + | 0.02248 | chr8:124728821-124731062 | Epigenome browser | Genome browser |