| Track/Table Name |
Release Date
|
|
Affymetrix ENCODE Extension Transcription Sites & Signal |
16 Apr 2008 |
|
ENCODE TBA SCONE Conservation (Update) |
19 Oct 2007 |
|
ENCODE UC Davis ChIP-chip NimbleGen (E2F1, c-Myc, TAF, POLII) |
24 Jul 2007 |
|
ENCODE Yale ChIP-chip Sites - Jun07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Sig - Jun07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Pval - Jun07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Sites - Apr07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Sig - Apr07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Pval - Apr07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Sites - Update to Jan07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Sig - Jan07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Pval - Jan07 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Sites Update to Nov06 batch |
13 Jul 2007 |
|
ENCODE Yale ChIP-chip Sig - Nov06 batch |
13 Jul 2007 |
|
ENCODE University of Virginia DNA Replication Origins (data update) |
30 May 2007 |
|
ENCODE Duke Dnase/chip - Feb07 batch (data addition) |
21 May 2007 |
|
ENCODE Gencode RACEfrags |
18 May 2007 |
|
ENCODE Gencode Gene Annotations (March 2007) |
04 May 2007 |
|
ENCODE UCD Ng ChIP Hits (update of cMyc and E2F1 data) |
17 Apr 2007 |
|
ENCODE Yale RFBR (Regulatory Factor Binding Regions) |
21 Feb 2007 |
|
ENCODE: UCSC EvoFold (Encode predictions analyzed in Washietl, Pedersen, et al., 2007). Replaces TBA23 EvoFold data. |
13 Feb 2007 |
|
ENCODE - University of Vienna, RNA secondary structure predicted by RNAz |
16 Jan 2007 |
|
ENCODE Yale RNA (update with October 2005 freeze data) |
10 Jan 2007 |
|
ENCODE UW/Reg QCP DNaseI Sens (replaces the following three tracks: UW/Reg DNaseI HSs, UW/Reg Q/A, UW DNase GM) |
07 Dec 2006 |
|
ENCODE Duke/NHGRI DNase (New Chip method in HepG2, Hela, GM, and CD4+) |
05 Dec 2006 |
|
ENCODE UT-Austin STAGE (update to add STAT1 tags) |
29 Nov 2006 |
|
ENCODE GIS Chip-PET (P53 in HCT116, STAT1 in HeLa, c-Myc in P493) |
07 Nov 2006 |
|
ENCODE NHGRI/PSU/UCSC TBA Conserved Elements |
05 Oct 2006 |
|
ENCODE NHGRI/PSU/UCSC TBA Conservation |
05 Oct 2006 |
|
ENCODE NHGRI/PSU TBA Alignments |
05 Oct 2006 |
|
ENCODE MSA Consensus Constrained Elements |
04 Oct 2006 |
|
ENCODE UC Berkeley MAVID Alignments |
04 Oct 2006 |
|
ENCODE UC Berkeley MAVID Conservation |
04 Oct 2006 |
|
ENCODE UC Berkeley MAVID Conserved Elements |
04 Oct 2006 |
|
ENCODE Stanford MLAGAN Conserved Elements |
04 Oct 2006 |
|
ENCODE Stanford MLAGAN Conservation |
04 Oct 2006 |
|
ENCODE Stanford MLAGAN Alignments |
04 Oct 2006 |
|
ENCODE MSA Alignment Gaps |
04 Oct 2006 |
|
ENCODE MSA Alignment Agreement |
04 Oct 2006 |
|
ENCODE UNC FAIRE track (data update) |
21 Aug 2006 |
|
8 new subtracks for ENCODE Sanger ChIP-chip track |
17 Aug 2006 |
|
ENCODE University of Uppsala, Sweden ChIP-chip Na-butyrate time series |
26 Jun 2006 |
|
ENCODE UNC FAIRE Peaks (ChIPOTle) Apr. 2006 Update, new subtrack added to UNC FAIRE |
15 Jun 2006 |
|
ENCODE UW DNase/Array GM06990 |
13 Jun 2006 |
|
ENCODE Sanger ChIP (additional data in HFL-1 cell line) |
24 May 2006 |
|
ENCODE Detection of LinEage Specific Selection (DLESS) |
19 May 2006 |
|
ENCODE Yale ChIP Sites (data replaced with 5 new transcription factors). Previous track Yale ChIP Sites renamed Yale STAT1 Sites. |
13 Jan 2006 |
|
ENCODE Yale ChIP Signal (data replaced with 5 new transcription factors). Previous track Yale ChIP Signal renamed Yale STAT1 Signal. |
13 Jan 2006 |
|
ENCODE Yale ChIP pVal (data replaced with 5 new transcription factors). Previous track Yale ChIP pVal renamed Yale STAT1 pVal. |
13 Jan 2006 |
|
ENCODE EGASP Full (Correction) |
12 Jan 2006 |
|
ENCODE EGASP Partial (data correction) |
11 Jan 2006 |
|
Recomb Hotspots: ENCODE recombination hotspots and rates |
06 Jan 2006 |
|
ENCODE Uppsala Chip (University of Uppsala, Sweden ChIP-chip coordinate corrections) |
03 Jan 2006 |
|
ENCODE Yale TAR (Replace June data with new methods) |
02 Jan 2006 |
|
ENCODE UVa DNA Rep Ori (University of Virginia DNA Replication Origins, Oct 2005 Freeze) |
29 Dec 2005 |
|
ENCODE UT-Austin STAGE (Sequence Tag Analysis of Genomic Enrichment), c-Myc in HeLa cells |
28 Dec 2005 |
|
ENCODE Affy Transfrags (updated HeLa data) |
21 Dec 2005 |
|
ENCODE Affy RNA Signal (updated HeLa data) |
21 Dec 2005 |
|
ENCODE UVa DNA Rep TR50 (University of Virginia DNA Smoothed Timing at 50% Replication, Oct 2005 Freeze) |
16 Dec 2005 |
|
ENCODE UVa DNA Rep Seg (University of Virginia DNA Replication Temporal Segmentation, Oct 2005 Freeze) |
02 Dec 2005 |
|
ENCODE Sanger ChIP Hits (Peaks and Centers, Oct 2005 Freeze) |
22 Nov 2005 |
|
ENCODE Sanger ChIP (H3, H4 histones in GM, K562 and HeLa cells, Oct 2005 Freeze) |
22 Nov 2005 |
|
ENCODE UNC FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements, Oct 2005 Freeze)
|
22 Nov 2005 |
|
ENCODE UCD Ng ChIP (UC Davis ChIP-chip of E2F1, Myc in HeLa, Oct 2005 Freeze) |
18 Nov 2005 |
|
ENCODE Uppsala Chip (University of Uppsala, Sweden ChIP-chip of H3ac,HNF3b,HNF4a,USF1 in HepG2 cells, Oct 2005 Freeze) |
18 Nov 2005 |
|
ENCODE Affy Strict Sites (Affymetrix ChIP-chip of 5 factors in HL60 cells, Oct 2005 Freeze) |
18 Nov 2005 |
|
ENCODE Affy Strict (Affymetrix ChIP-chip of 5 factors in HL60 cells, Oct 2005 Freeze) |
18 Nov 2005 |
|
ENCODE Affy Strict Pval (Affymetrix ChIP-chip on 5 factors, in HL60 cells, Oct 2005 Freeze) |
18 Nov 2005 |
|
ENCODE Affy RNA (RNA abundance and transfrags, Oct 2005 Freeze) |
07 Nov 2005 |
|
ENCODE UT-Austin ChIP (c-Myc and EF24 in HeLa and 20901 fibroblasts, Oct 2005 Freeze) |
07 Nov 2005 |
|
ENCODE NHGRI DnaseI-HS (MPSS and Chip methods, in CD4 and GM09660, Oct 2005 Freeze) |
07 Nov 2005 |
|
ENCODE GIS PET RNA (update Oct 2005 Freeze and new estrogen-treated MCF7) |
07 Nov 2005 |
|
ENCODE Gencode Genes (Oct 2005 Freeze) |
07 Nov 2005 |
|
ENCODE LI Ng gIF ChIP (Addition of 5 antibodies, in HeLa cells) |
27 Oct 2005 |
|
ENCODE EGASP Update (Add Fgenesh++ corrected predictions) |
14 Oct 2005 |
|
ENCODE GIS STAT1 +/- gIF HeLa |
14 Oct 2005 |
|
ENCODE UVa DNA Rep Seg, UVa DNA Rep Ori (DNA replication timing segmentation and origins) |
04 Oct 2005 |
|
ENCODE YALE MAS TAR (additional data) |
27 Sep 2005 |
|
ENCODE YALE MAS RNA (additional data from June freeze) |
27 Sep 2005 |
|
ENCODE BU Orchid |
21 Sep 2005 |
|
ENCODE NHGRI DIPs: Whole Genome Shotgun insertion/deletion polymorphisms from Jim Mullikin/SSAHA |
21 Sep 2005 |
|
ENCODE: LI Ng gIF ChIP (HeLa) |
20 Sep 2005 |
|
ENCODE: LI Ng Validation (Pol2, Taf1, H3K4me, H3ac) |
20 Sep 2005 |
|
ENCODE Sanger ChIP-chip |
20 Sep 2005 |
|
ENCODE: Ludwig Institute/UCSD ChIP-chip - Pol II, TAF1, AcH3, H3K4me, SUZ12, and H3K27me antibodies - repackage three existing tracks into one |
20 Sep 2005 |
|
ENCODE: Yale ChIP-chip (STAT1 ab, Hela cells, P-Values) |
20 Sep 2005 |
|
ENCODE: LI gIF ChIP (HeLa)
|
19 Sep 2005 |
|
ENCODE HapMap Allele Frequencies |
19 Sep 2005 |
|
ENCODE: GIS P53 5FU HCT116 |
19 Sep 2005 |
|
ENENCODE: Affy Transfrags, Affy pVal {0,2,8,32}h, Affy Sites {0,2,8,32}h |
16 Sep 2005 |
|
ENCODE: Affy RNA Signal |
16 Sep 2005 |
|
ENCODE: Yale MAS array, RNA Transcript Map, Placenta, Nimblegen Protocol |
16 Sep 2005 |
|
ENCODE: Yale MAS array, RNA Transcriptionally Active Regions, Placenta, Nimblegen Protocol |
16 Sep 2005 |
|
ENCODE: Yale ChIP-chip (STAT1 ab, Hela cells, Signal) |
16 Sep 2005 |
|
ENCODE: Yale ChIP-chip (STAT1 ab, Hela cells, Binding Sites) |
16 Sep 2005 |
|
ENCODE: Yale TAR |
16 Sep 2005 |
|
ENCODE: Stanford Endogenous Transcript Levels in HCT116 Cells;
Stanford ChIP-chip (HCT116, Jurkat, K562 cells; Sp1, Sp3 ChIP);
Stanford ChIP-chip Smoothed Score;
Stanford Methylation Digest: Be2C, CRL1690, HCT116, HT1080, HepG2, JEG3, Snu182, U87;
Stanford Methylation Digest Smoothed Score |
16 Sep 2005 |
|
ENCODE: Stanf Promoter |
15 Sep 2005 |
|
ENCODE: BU First Exon |
15 Sep 2005 |
|
ENCODE: Yale RNA |
15 Sep 2005 |
|
ENCODE: Sanger Assoc |
15 Sep 2005 |
|
ENCODE: UC Davis ChIP-chip Nimblegen - E2F1 ab, HeLa Cells |
15 Sep 2005 |
|
ENCODE: GIS RNA PET |
15 Sep 2005 |
|
ENCODE: TBA23 EvoFold (Predictions of RNA Secondary Structure Using TBA23, ENCODE Regions only) |
15 Sep 2005 |
|
ENCODE: Known+Pred RNA (Known and Predicted RNA Transcription) |
15 Sep 2005 |
|
ENCODE: UW/Regulome DNase I Hypersensitivity Probability |
14 Sep 2005 |
|
ENCODE: Regulome DNase I Hypersensitivity |
14 Sep 2005 |
|
ENCODE: NHGRI DNaseI-HS |
14 Sep 2005 |
|
ENCODE: Riken CAGE - predicted gene start sites |
13 Sep 2005 |
|
ENCODE Gene Prediction Workshop (EGASP) Updates |
12 Sep 2005 |
|
ENCODE Regions |
15 Sep 2004 |
