Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| UCON29 | DNA | 240 | 1.85E-06 | 4.371e-06 | Brain |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| PiggyBac? | 44274 | 299 | 0.01351 |
Found 8 UCON29 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr20 | 36479510 | 36479616 | + | 0.04363 | chr20:36477648-36479664 | Epigenome browser | Genome browser |
| chr3 | 193894567 | 193894722 | + | 0.01624 | chr3:193894302-193894745 | Epigenome browser | Genome browser |
| chr12 | 1721129 | 1721529 | + | 0.002057 | chr12:1721394-1721878 | Epigenome browser | Genome browser |
| chr6 | 149140410 | 149140593 | - | 0.0032 | chr6:149140263-149140572 | Epigenome browser | Genome browser |
| chr5 | 53482008 | 53482290 | + | 0.005144 | chr5:53482092-53482486 | Epigenome browser | Genome browser |
| chr1 | 208774282 | 208774508 | - | 0.0000009848 | chr1:208774375-208774852 | Epigenome browser | Genome browser |
| chr22 | 44543926 | 44544012 | + | 0.002422 | chr22:44543778-44544088 | Epigenome browser | Genome browser |
| chr9 | 131960927 | 131960986 | - | 0.001879 | chr9:131960542-131961190 | Epigenome browser | Genome browser |