Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
MER92B | LTR | 889 | 6.80E-07 | 4.8e-07 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 264596 | 1687 | 0.01275 |
Found 17 MER92B transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr1 | 5453229 | 5453811 | - | 0.000001251 | chr1:5453650-5454538 | Epigenome browser | Genome browser |
chr17 | 40583881 | 40584178 | - | 0.00002305 | chr17:40583437-40584634 | Epigenome browser | Genome browser |
chr2 | 24162112 | 24162697 | - | 0.0001976 | chr2:24161907-24163250 | Epigenome browser | Genome browser |
chr19 | 24217771 | 24217955 | - | 0.008476 | chr19:24217509-24218832 | Epigenome browser | Genome browser |
chr14 | 87206112 | 87206520 | + | 0.01206 | chr14:87205621-87206604 | Epigenome browser | Genome browser |
chr19 | 20842347 | 20842396 | + | 0.009864 | chr19:20841792-20842631 | Epigenome browser | Genome browser |
chr19 | 20190236 | 20190579 | - | 0.003831 | chr19:20190164-20190819 | Epigenome browser | Genome browser |
chr2 | 83737491 | 83738105 | + | 0.03358 | chr2:83737090-83738100 | Epigenome browser | Genome browser |
chr1 | 4015744 | 4015827 | - | 0.00001739 | chr1:4015298-4015916 | Epigenome browser | Genome browser |
chr19 | 20013953 | 20014243 | - | 0.03375 | chr19:20014164-20016113 | Epigenome browser | Genome browser |
chr14 | 104185219 | 104185444 | - | 0.02422 | chr14:104184201-104185479 | Epigenome browser | Genome browser |
chr1 | 4402967 | 4403515 | + | 0.000000002352 | chr1:4401457-4403567 | Epigenome browser | Genome browser |
chr2 | 24161967 | 24162052 | - | 0.04541 | chr2:24161907-24163250 | Epigenome browser | Genome browser |
chr21 | 44615842 | 44615979 | - | 0.0002791 | chr21:44610628-44617755 | Epigenome browser | Genome browser |
chr8 | 128079830 | 128080357 | - | 0.000000242 | chr8:128079854-128080793 | Epigenome browser | Genome browser |
chr2 | 24163000 | 24163061 | - | 0.0425 | chr2:24161907-24163250 | Epigenome browser | Genome browser |
chr2 | 24162057 | 24162111 | - | 0.01542 | chr2:24161907-24163250 | Epigenome browser | Genome browser |