Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
MER89 | LTR | 1375 | 6.35E-06 | 1.372e-07 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 427648 | 2881 | 0.01347 |
Found 30 MER89 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr5 | 63557561 | 63557770 | - | 0.001714 | chr5:63557338-63558067 | Epigenome browser | Genome browser |
chr7 | 50934690 | 50934930 | - | 0.01817 | chr7:50933922-50935236 | Epigenome browser | Genome browser |
chr10 | 79699653 | 79700155 | + | 0.003979 | chr10:79698539-79699942 | Epigenome browser | Genome browser |
chr10 | 20292660 | 20292901 | - | 0.04324 | chr10:20292103-20295144 | Epigenome browser | Genome browser |
chr5 | 179287299 | 179287372 | + | 0.00000005399 | chr5:179286497-179287430 | Epigenome browser | Genome browser |
chr15 | 101547690 | 101548084 | - | 0.001328 | chr15:101547491-101548574 | Epigenome browser | Genome browser |
chr13 | 111658190 | 111658706 | - | 0.00000006723 | chr13:111657501-111659156 | Epigenome browser | Genome browser |
chr5 | 179287393 | 179287674 | + | 0.00000001038 | chr5:179286497-179287430 | Epigenome browser | Genome browser |
chr6 | 155904911 | 155905363 | - | 0.0113 | chr6:155904503-155905494 | Epigenome browser | Genome browser |
chr16 | 78682355 | 78682784 | + | 0.01666 | chr16:78682061-78682840 | Epigenome browser | Genome browser |
chr2 | 102584730 | 102584970 | - | 0.001491 | chr2:102583181-102586037 | Epigenome browser | Genome browser |
chr20 | 3855021 | 3855466 | - | 0.00000003173 | chr20:3854446-3855877 | Epigenome browser | Genome browser |
chr21 | 43112575 | 43112918 | - | 0.0000343 | chr21:43111123-43113162 | Epigenome browser | Genome browser |
chr4 | 7926368 | 7926891 | + | 0.003173 | chr4:7925489-7926535 | Epigenome browser | Genome browser |
chr2 | 20831616 | 20832067 | + | 0.003014 | chr2:20831358-20833047 | Epigenome browser | Genome browser |
chr1 | 193365406 | 193365700 | + | 0.00001314 | chr1:193365292-193366333 | Epigenome browser | Genome browser |
chr21 | 35855611 | 35856026 | - | 0.03868 | chr21:35855533-35856538 | Epigenome browser | Genome browser |
chr1 | 150504683 | 150504723 | + | 0.0000007643 | chr1:150503794-150504917 | Epigenome browser | Genome browser |
chr3 | 41730330 | 41730762 | + | 0.0001783 | chr3:41730000-41730809 | Epigenome browser | Genome browser |
chr12 | 128622286 | 128622615 | + | 0.002194 | chr12:128622115-128623729 | Epigenome browser | Genome browser |
chr8 | 73962115 | 73962552 | - | 0.004892 | chr8:73960900-73963781 | Epigenome browser | Genome browser |
chr12 | 133187420 | 133187480 | + | 0.02863 | chr12:133187272-133187893 | Epigenome browser | Genome browser |
chr7 | 3794646 | 3795021 | - | 0.0001721 | chr7:3794508-3795239 | Epigenome browser | Genome browser |
chr18 | 57645572 | 57645778 | + | 0.000015 | chr18:57645541-57646391 | Epigenome browser | Genome browser |
chr19 | 57752455 | 57752825 | + | 0.000003435 | chr19:57752532-57754660 | Epigenome browser | Genome browser |
chr14 | 105164902 | 105164960 | - | 0.02261 | chr14:105156404-105166983 | Epigenome browser | Genome browser |
chr14 | 105164965 | 105165026 | - | 0.0002479 | chr14:105156404-105166983 | Epigenome browser | Genome browser |
chr14 | 105164659 | 105164790 | - | 0.002002 | chr14:105156404-105166983 | Epigenome browser | Genome browser |
chr1 | 150503966 | 150504408 | + | 0.01006 | chr1:150503794-150504917 | Epigenome browser | Genome browser |
chr6 | 13849118 | 13849608 | - | 0.002911 | chr6:13849031-13849767 | Epigenome browser | Genome browser |