Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER83B | LTR | 144 | 2.92E-06 | 2.737e-05 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 36794 | 313 | 0.01701 |
Found 5 MER83B transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr9 | 122578374 | 122578759 | - | 0.02204 | chr9:122577848-122579087 | Epigenome browser | Genome browser |
| chr16 | 66523477 | 66523715 | - | 0.000009142 | chr16:66523124-66524357 | Epigenome browser | Genome browser |
| chr3 | 42925999 | 42926346 | + | 0.03578 | chr3:42925851-42927506 | Epigenome browser | Genome browser |
| chr19 | 46977347 | 46977631 | + | 0.000005085 | chr19:46976944-46979202 | Epigenome browser | Genome browser |
| chr1 | 57492887 | 57493226 | + | 0.01185 | chr1:57491501-57493389 | Epigenome browser | Genome browser |