Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
MER77 | LTR | 1287 | 2.32E-05 | 1.4e-08 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVL | 491578 | 3688 | 0.015 |
Found 16 MER77 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr1 | 11033454 | 11033644 | + | 0.04175 | chr1:11033219-11036156 | Epigenome browser | Genome browser |
chr6 | 116707496 | 116708025 | - | 0.02447 | chr6:116706104-116708830 | Epigenome browser | Genome browser |
chr4 | 2762285 | 2762758 | + | 0.0001985 | chr4:2762581-2763889 | Epigenome browser | Genome browser |
chr8 | 29600302 | 29600438 | + | 0.008324 | chr8:29593850-29600324 | Epigenome browser | Genome browser |
chr10 | 94651873 | 94652431 | - | 0.0000804 | chr10:94650254-94652364 | Epigenome browser | Genome browser |
chr2 | 153638515 | 153639095 | + | 0.00004996 | chr2:153638445-153639412 | Epigenome browser | Genome browser |
chr13 | 54784578 | 54785265 | + | 0.0009195 | chr13:54784370-54785218 | Epigenome browser | Genome browser |
chr9 | 137346603 | 137347172 | + | 0.0000403 | chr9:137347008-137349419 | Epigenome browser | Genome browser |
chr20 | 45762171 | 45762734 | - | 0.00005598 | chr20:45761877-45763559 | Epigenome browser | Genome browser |
chr10 | 61655464 | 61655928 | + | 0.000000009059 | chr10:61653159-61656190 | Epigenome browser | Genome browser |
chr16 | 85746350 | 85746602 | + | 0.00618 | chr16:85745418-85747170 | Epigenome browser | Genome browser |
chr19 | 51573536 | 51574095 | - | 0.002572 | chr19:51573084-51574365 | Epigenome browser | Genome browser |
chr8 | 133074994 | 133075585 | + | 0.01863 | chr8:133074932-133076713 | Epigenome browser | Genome browser |
chr5 | 174771144 | 174771755 | - | 0.000002909 | chr5:174770885-174772704 | Epigenome browser | Genome browser |
chr19 | 50553267 | 50553610 | + | 0.003689 | chr19:50552938-50553833 | Epigenome browser | Genome browser |
chr19 | 46895014 | 46895431 | - | 0.0003758 | chr19:46894001-46895530 | Epigenome browser | Genome browser |