Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER6A | DNA | 1018 | 3.95E-08 | 4.236e-11 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| TcMar-Tigger | 371006 | 3511 | 0.01893 |
Found 22 MER6A transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr3 | 145998499 | 145999050 | - | 0.001416 | chr3:145998389-145999242 | Epigenome browser | Genome browser |
| chr17 | 54897427 | 54898029 | - | 0.000004657 | chr17:54896934-54898044 | Epigenome browser | Genome browser |
| chr3 | 153270856 | 153271449 | - | 0.0000001073 | chr3:153271074-153271813 | Epigenome browser | Genome browser |
| chr1 | 41197456 | 41197697 | + | 0.01857 | chr1:41197527-41199072 | Epigenome browser | Genome browser |
| chr2 | 172289280 | 172289867 | - | 0.0001412 | chr2:172288737-172289881 | Epigenome browser | Genome browser |
| chr12 | 77721938 | 77722515 | - | 0.0006921 | chr12:77721413-77722688 | Epigenome browser | Genome browser |
| chr1 | 212330093 | 212330663 | + | 0.002256 | chr1:212330392-212331324 | Epigenome browser | Genome browser |
| chr18 | 21940554 | 21940995 | + | 0.006311 | chr18:21939854-21941126 | Epigenome browser | Genome browser |
| chr5 | 134766248 | 134766446 | + | 0.00003535 | chr5:134764506-134766551 | Epigenome browser | Genome browser |
| chr11 | 130815796 | 130816401 | + | 0.0000005445 | chr11:130816198-130817440 | Epigenome browser | Genome browser |
| chr12 | 114276298 | 114276407 | - | 0.001159 | chr12:114273223-114278304 | Epigenome browser | Genome browser |
| chr2 | 65293107 | 65293448 | - | 0.03309 | chr2:65291474-65293672 | Epigenome browser | Genome browser |
| chr12 | 114275636 | 114276114 | - | 0.0000000458 | chr12:114273223-114278304 | Epigenome browser | Genome browser |
| chr14 | 75165834 | 75166051 | + | 0.0009408 | chr14:75165045-75166463 | Epigenome browser | Genome browser |
| chr12 | 59404725 | 59405302 | + | 0.000198 | chr12:59403447-59405371 | Epigenome browser | Genome browser |
| chr2 | 40001040 | 40001657 | + | 0.04153 | chr2:40000741-40002813 | Epigenome browser | Genome browser |
| chr20 | 47800751 | 47801122 | - | 0.03352 | chr20:47800762-47802975 | Epigenome browser | Genome browser |
| chr4 | 76472615 | 76473221 | - | 0.0000003435 | chr4:76472984-76473709 | Epigenome browser | Genome browser |
| chr20 | 53033078 | 53033673 | - | 0.01634 | chr20:53033126-53033943 | Epigenome browser | Genome browser |
| chr5 | 172281405 | 172281994 | + | 0.01724 | chr5:172279558-172288934 | Epigenome browser | Genome browser |
| chr17 | 58397481 | 58398065 | - | 0.00553 | chr17:58398001-58398621 | Epigenome browser | Genome browser |
| chr8 | 107677067 | 107677427 | - | 0.0007114 | chr8:107676776-107677898 | Epigenome browser | Genome browser |