Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER68B | LTR | 449 | 1.03E-07 | 5.431e-12 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERVL | 146496 | 1242 | 0.01696 |
Found 9 MER68B transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr7 | 149414283 | 149414522 | - | 0.02376 | chr7:149412348-149418431 | Epigenome browser | Genome browser |
| chr1 | 212607612 | 212608089 | + | 0.002153 | chr1:212607005-212608161 | Epigenome browser | Genome browser |
| chr4 | 7872904 | 7873463 | + | 0.0001344 | chr4:7872654-7873740 | Epigenome browser | Genome browser |
| chr19 | 4248167 | 4248216 | - | 0.0000001845 | chr19:4247500-4248817 | Epigenome browser | Genome browser |
| chr16 | 84566436 | 84566993 | - | 0.0004157 | chr16:84566241-84567112 | Epigenome browser | Genome browser |
| chr9 | 26605471 | 26606005 | + | 0.02539 | chr9:26605235-26605891 | Epigenome browser | Genome browser |
| chr4 | 186304699 | 186305183 | + | 0.02223 | chr4:186304374-186305359 | Epigenome browser | Genome browser |
| chr19 | 4247743 | 4247860 | - | 0.009426 | chr19:4247500-4248817 | Epigenome browser | Genome browser |
| chr5 | 151049665 | 151050213 | + | 0.0005484 | chr5:151048784-151064647 | Epigenome browser | Genome browser |