Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
MER68 | LTR | 1491 | 8.65E-06 | 4.427e-08 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVL | 553550 | 4383 | 0.01584 |
Found 25 MER68 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr22 | 33939774 | 33940314 | + | 0.0002903 | chr22:33938601-33941113 | Epigenome browser | Genome browser |
chr4 | 183452627 | 183453169 | - | 0.000003339 | chr4:183452385-183453606 | Epigenome browser | Genome browser |
chr6 | 3373181 | 3373720 | + | 0.002153 | chr6:3372351-3373889 | Epigenome browser | Genome browser |
chr19 | 34727228 | 34727669 | - | 0.0000000005483 | chr19:34726360-34728160 | Epigenome browser | Genome browser |
chr16 | 87958803 | 87959169 | - | 0.000005872 | chr16:87956698-87959757 | Epigenome browser | Genome browser |
chr4 | 7245102 | 7245517 | - | 0.001625 | chr4:7244628-7246094 | Epigenome browser | Genome browser |
chr10 | 20284084 | 20284639 | - | 0.0000002428 | chr10:20283965-20286345 | Epigenome browser | Genome browser |
chr7 | 152463170 | 152463676 | - | 0.005745 | chr7:152463065-152463821 | Epigenome browser | Genome browser |
chr22 | 34199493 | 34200022 | - | 0.00352 | chr22:34199458-34200229 | Epigenome browser | Genome browser |
chr8 | 127387634 | 127388154 | + | 0.01422 | chr8:127386519-127390583 | Epigenome browser | Genome browser |
chr2 | 191589308 | 191589788 | + | 0.005504 | chr2:191588891-191589863 | Epigenome browser | Genome browser |
chr2 | 20634781 | 20635024 | + | 0.001536 | chr2:20634555-20635709 | Epigenome browser | Genome browser |
chr8 | 141802172 | 141802662 | + | 0.03631 | chr8:141801085-141803084 | Epigenome browser | Genome browser |
chr21 | 43399829 | 43400359 | - | 0.0000001068 | chr21:43399506-43400567 | Epigenome browser | Genome browser |
chr20 | 58063832 | 58064085 | - | 0.002654 | chr20:58063562-58065142 | Epigenome browser | Genome browser |
chr4 | 10008254 | 10008819 | + | 0.002688 | chr4:10006334-10011052 | Epigenome browser | Genome browser |
chrX | 67452046 | 67452626 | - | 0.04521 | chrX:67452021-67452722 | Epigenome browser | Genome browser |
chr12 | 127380596 | 127381143 | + | 0.0005003 | chr12:127380296-127381636 | Epigenome browser | Genome browser |
chr11 | 8430193 | 8430699 | - | 0.04039 | chr11:8429695-8430883 | Epigenome browser | Genome browser |
chr19 | 2923531 | 2924005 | + | 0.00759 | chr19:2922508-2924578 | Epigenome browser | Genome browser |
chr5 | 5429029 | 5429557 | - | 0.008811 | chr5:5428011-5429374 | Epigenome browser | Genome browser |
chr20 | 58063686 | 58063833 | - | 0.01056 | chr20:58063562-58065142 | Epigenome browser | Genome browser |
chr4 | 148599638 | 148600174 | + | 0.00004068 | chr4:148599076-148599838 | Epigenome browser | Genome browser |
chr13 | 53510965 | 53511519 | + | 0.00000208 | chr13:53509889-53511667 | Epigenome browser | Genome browser |
chr1 | 19696759 | 19697276 | - | 0.0002488 | chr1:19694228-19697362 | Epigenome browser | Genome browser |