Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER67A | LTR | 468 | 5.06E-06 | 3.418e-06 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 121883 | 807 | 0.01324 |
Found 11 MER67A transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr12 | 112196771 | 112196810 | - | 0.001368 | chr12:112194896-112197671 | Epigenome browser | Genome browser |
| chr16 | 71597880 | 71598404 | + | 0.00199 | chr16:71597821-71598477 | Epigenome browser | Genome browser |
| chr10 | 6665954 | 6666382 | + | 0.00002068 | chr10:6666252-6667203 | Epigenome browser | Genome browser |
| chr10 | 73790519 | 73790743 | - | 0.04254 | chr10:73790101-73791068 | Epigenome browser | Genome browser |
| chr8 | 52899514 | 52900111 | + | 0.03483 | chr8:52899396-52902151 | Epigenome browser | Genome browser |
| chr2 | 121878181 | 121878279 | + | 0.04962 | chr2:121877570-121879019 | Epigenome browser | Genome browser |
| chr2 | 48793723 | 48794109 | - | 0.0002393 | chr2:48793800-48794540 | Epigenome browser | Genome browser |
| chr6 | 158862681 | 158863172 | + | 0.00002662 | chr6:158862226-158863578 | Epigenome browser | Genome browser |
| chr7 | 154120178 | 154120706 | - | 0.0004049 | chr7:154119238-154121954 | Epigenome browser | Genome browser |
| chr1 | 232279095 | 232279585 | - | 0.001857 | chr1:232278603-232279857 | Epigenome browser | Genome browser |
| chr10 | 5113697 | 5114229 | + | 0.001039 | chr10:5112738-5114384 | Epigenome browser | Genome browser |