Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER61C | LTR | 300 | 1.77E-05 | 1.763e-06 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 110526 | 1166 | 0.0211 |
Found 11 MER61C transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr4 | 169954779 | 169955204 | - | 0.002937 | chr4:169954297-169955667 | Epigenome browser | Genome browser |
| chr10 | 84452161 | 84452590 | - | 0.01325 | chr10:84451124-84452809 | Epigenome browser | Genome browser |
| chr11 | 94297177 | 94297494 | - | 0.00001712 | chr11:94297327-94298456 | Epigenome browser | Genome browser |
| chr6 | 142698255 | 142698676 | - | 0.0008947 | chr6:142698003-142698574 | Epigenome browser | Genome browser |
| chr8 | 52837567 | 52837984 | - | 0.03982 | chr8:52837106-52838276 | Epigenome browser | Genome browser |
| chr4 | 89376377 | 89376770 | - | 0.04376 | chr4:89376115-89377054 | Epigenome browser | Genome browser |
| chr3 | 75258337 | 75258668 | + | 0.00001037 | chr3:75257877-75259792 | Epigenome browser | Genome browser |
| chr1 | 194504383 | 194504800 | - | 0.0002686 | chr1:194504230-194505042 | Epigenome browser | Genome browser |
| chr4 | 168818284 | 168818614 | - | 0.003385 | chr4:168818159-168818812 | Epigenome browser | Genome browser |
| chr7 | 40756794 | 40757217 | - | 0.00000006066 | chr7:40756634-40757418 | Epigenome browser | Genome browser |
| chr9 | 91547629 | 91548015 | - | 0.01086 | chr9:91546725-91547769 | Epigenome browser | Genome browser |