Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER50C | LTR | 115 | 8.90E-08 | 4.468e-08 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 35030 | 340 | 0.01941 |
Found 2 MER50C transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr14 | 34766947 | 34767596 | + | 0.0003207 | chr14:34766792-34767699 | Epigenome browser | Genome browser |
| chr16 | 46673588 | 46673630 | + | 0.008738 | chr16:46672113-46675543 | Epigenome browser | Genome browser |