Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
MER50 | LTR | 2520 | 2.15E-07 | 2.031e-10 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 1101211 | 12695 | 0.02306 |
Found 56 MER50 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr8 | 32346381 | 32347061 | - | 0.0001217 | chr8:32346427-32347923 | Epigenome browser | Genome browser |
chr14 | 100148771 | 100148910 | + | 0.0002462 | chr14:100148704-100149575 | Epigenome browser | Genome browser |
chr3 | 45613682 | 45614363 | + | 0.004972 | chr3:45613112-45614494 | Epigenome browser | Genome browser |
chr7 | 47080188 | 47080928 | + | 0.0000002555 | chr7:47079682-47080911 | Epigenome browser | Genome browser |
chr3 | 40761100 | 40761799 | + | 0.00000005211 | chr3:40760978-40762797 | Epigenome browser | Genome browser |
chr2 | 202799318 | 202799556 | - | 0.0003482 | chr2:202799018-202800161 | Epigenome browser | Genome browser |
chr7 | 131040847 | 131040978 | - | 0.0002833 | chr7:131040679-131041533 | Epigenome browser | Genome browser |
chr3 | 96951380 | 96952082 | - | 0.005583 | chr3:96951065-96952454 | Epigenome browser | Genome browser |
chr8 | 68292569 | 68293271 | + | 0.004933 | chr8:68292900-68293550 | Epigenome browser | Genome browser |
chr16 | 75164199 | 75164673 | - | 0.007478 | chr16:75163445-75164408 | Epigenome browser | Genome browser |
chr9 | 117647315 | 117647588 | - | 0.004799 | chr9:117646942-117647666 | Epigenome browser | Genome browser |
chr12 | 78852528 | 78853057 | - | 0.004596 | chr12:78852525-78853370 | Epigenome browser | Genome browser |
chr2 | 202040944 | 202041179 | - | 0.001637 | chr2:202040491-202041617 | Epigenome browser | Genome browser |
chr3 | 177245076 | 177245777 | + | 0.00006828 | chr3:177244725-177246043 | Epigenome browser | Genome browser |
chr11 | 78306619 | 78307198 | + | 0.02729 | chr11:78307009-78308073 | Epigenome browser | Genome browser |
chr14 | 96584086 | 96584800 | - | 0.01713 | chr14:96582550-96584221 | Epigenome browser | Genome browser |
chr9 | 38196138 | 38196289 | + | 0.00141 | chr9:38195417-38197847 | Epigenome browser | Genome browser |
chr5 | 77054441 | 77054948 | - | 0.00003011 | chr5:77053967-77055999 | Epigenome browser | Genome browser |
chr8 | 20135513 | 20136207 | + | 0.006946 | chr8:20132867-20139343 | Epigenome browser | Genome browser |
chr6 | 88482772 | 88483456 | + | 0.0004243 | chr6:88482255-88483277 | Epigenome browser | Genome browser |
chr16 | 11397162 | 11397838 | + | 0.0000003574 | chr16:11396617-11398011 | Epigenome browser | Genome browser |
chr9 | 117646966 | 117647320 | - | 0.0000001053 | chr9:117646942-117647666 | Epigenome browser | Genome browser |
chr11 | 10026499 | 10027221 | + | 0.02077 | chr11:10026054-10027766 | Epigenome browser | Genome browser |
chr7 | 131040974 | 131041195 | - | 0.01899 | chr7:131040679-131041533 | Epigenome browser | Genome browser |
chr3 | 195443714 | 195443826 | - | 0.000001153 | chr3:195443036-195444503 | Epigenome browser | Genome browser |
chr3 | 46165174 | 46165814 | + | 0.000006523 | chr3:46164989-46165947 | Epigenome browser | Genome browser |
chr3 | 46047516 | 46048209 | + | 0.003219 | chr3:46047620-46048572 | Epigenome browser | Genome browser |
chr6 | 131707476 | 131707654 | - | 0.003341 | chr6:131706600-131707592 | Epigenome browser | Genome browser |
chr5 | 77053699 | 77053976 | - | 0.04496 | chr5:77053967-77055999 | Epigenome browser | Genome browser |
chr2 | 47979178 | 47979368 | - | 0.0000007032 | chr2:47978753-47979663 | Epigenome browser | Genome browser |
chr11 | 77755658 | 77756160 | - | 0.0002581 | chr11:77755704-77757367 | Epigenome browser | Genome browser |
chr7 | 111712615 | 111713328 | + | 0.01604 | chr7:111712522-111713279 | Epigenome browser | Genome browser |
chr2 | 24231730 | 24232447 | - | 0.00337 | chr2:24232014-24233016 | Epigenome browser | Genome browser |
chr6 | 3919057 | 3919817 | - | 0.00000001168 | chr6:3919658-3921814 | Epigenome browser | Genome browser |
chr11 | 102340250 | 102340878 | + | 0.03524 | chr11:102337266-102343118 | Epigenome browser | Genome browser |
chr2 | 167622517 | 167622988 | - | 0.005997 | chr2:167622340-167623133 | Epigenome browser | Genome browser |
chr12 | 66896728 | 66897463 | + | 0.009391 | chr12:66897401-66898023 | Epigenome browser | Genome browser |
chr1 | 184131253 | 184131826 | + | 0.00002054 | chr1:184130886-184132007 | Epigenome browser | Genome browser |
chr5 | 157345641 | 157346289 | - | 0.009697 | chr5:157345567-157346625 | Epigenome browser | Genome browser |
chr2 | 47978867 | 47979199 | - | 0.001618 | chr2:47978753-47979663 | Epigenome browser | Genome browser |
chr13 | 44569365 | 44570069 | - | 0.00001074 | chr13:44569694-44571364 | Epigenome browser | Genome browser |
chr2 | 202799921 | 202800369 | - | 0.03488 | chr2:202799018-202800161 | Epigenome browser | Genome browser |
chr11 | 115453028 | 115453247 | - | 0.000009629 | chr11:115450924-115453340 | Epigenome browser | Genome browser |
chr8 | 15512556 | 15513251 | + | 0.0003637 | chr8:15512563-15513368 | Epigenome browser | Genome browser |
chr7 | 80396009 | 80396565 | + | 0.0001762 | chr7:80395590-80396714 | Epigenome browser | Genome browser |
chr9 | 96896588 | 96897285 | + | 0.004447 | chr9:96896110-96898134 | Epigenome browser | Genome browser |
chr9 | 38195638 | 38195996 | + | 0.00000004446 | chr9:38195417-38197847 | Epigenome browser | Genome browser |
chr12 | 96231809 | 96232084 | - | 0.02155 | chr12:96230348-96231861 | Epigenome browser | Genome browser |
chr2 | 202040391 | 202040544 | - | 0.00000006939 | chr2:202040491-202041617 | Epigenome browser | Genome browser |
chr3 | 194649406 | 194650110 | + | 0.03069 | chr3:194649746-194652968 | Epigenome browser | Genome browser |
chr1 | 52073373 | 52073976 | - | 0.006986 | chr1:52073162-52074342 | Epigenome browser | Genome browser |
chr2 | 202040783 | 202040946 | - | 0.0005068 | chr2:202040491-202041617 | Epigenome browser | Genome browser |
chr6 | 31064578 | 31065067 | + | 0.0000001898 | chr6:31064411-31066009 | Epigenome browser | Genome browser |
chr19 | 43117715 | 43118408 | + | 0.0000003344 | chr19:43116906-43118553 | Epigenome browser | Genome browser |
chr1 | 30667308 | 30667545 | - | 0.02179 | chr1:30667271-30668146 | Epigenome browser | Genome browser |
chr14 | 45681606 | 45682290 | + | 0.04885 | chr14:45679936-45681723 | Epigenome browser | Genome browser |