Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER44D | DNA | 734 | 1.09E-07 | 1.128e-05 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| TcMar-Tigger | 230827 | 1917 | 0.01661 |
Found 4 MER44D transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr16 | 19700335 | 19700359 | + | 0.01913 | chr16:19699302-19700815 | Epigenome browser | Genome browser |
| chr3 | 119692024 | 119692728 | + | 0.01539 | chr3:119692015-119692889 | Epigenome browser | Genome browser |
| chr10 | 53697541 | 53698191 | + | 0.02027 | chr10:53696724-53698159 | Epigenome browser | Genome browser |
| chr1 | 161085154 | 161085665 | + | 0.007373 | chr1:161084132-161086924 | Epigenome browser | Genome browser |