Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER11D | LTR | 260 | 7.32E-07 | 1.709e-05 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERVK | 193682 | 2590 | 0.02674 |
Found 11 MER11D transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr5 | 79001824 | 79002697 | - | 0.000001484 | chr5:79001312-79004171 | Epigenome browser | Genome browser |
| chr22 | 42894290 | 42895181 | - | 0.0000002192 | chr22:42894484-42895426 | Epigenome browser | Genome browser |
| chr8 | 29399504 | 29400404 | + | 0.000002333 | chr8:29400025-29401418 | Epigenome browser | Genome browser |
| chr19 | 43565382 | 43565609 | - | 0.01988 | chr19:43563799-43566245 | Epigenome browser | Genome browser |
| chr1 | 89483786 | 89484641 | + | 0.0000009918 | chr1:89483590-89486439 | Epigenome browser | Genome browser |
| chr14 | 24413282 | 24414154 | - | 0.000006628 | chr14:24412079-24413718 | Epigenome browser | Genome browser |
| chr19 | 43565604 | 43565878 | - | 0.03822 | chr19:43563799-43566245 | Epigenome browser | Genome browser |
| chr7 | 30548650 | 30549510 | - | 0.00000003696 | chr7:30548485-30549972 | Epigenome browser | Genome browser |
| chr1 | 9184319 | 9185190 | + | 0.0000008071 | chr1:9184897-9188087 | Epigenome browser | Genome browser |
| chr1 | 47222184 | 47223054 | + | 0.001265 | chr1:47221397-47224555 | Epigenome browser | Genome browser |
| chr9 | 125571336 | 125572224 | + | 0.000004954 | chr9:125571362-125572415 | Epigenome browser | Genome browser |