Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| MER11C | LTR | 844 | 3.14E-07 | 4.463e-10 | H1ES |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERVK | 862608 | 14375 | 0.03333 |
Found 19 MER11C transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr6 | 30732321 | 30733394 | - | 0.006805 | chr6:30731205-30732413 | Epigenome browser | Genome browser |
| chr3 | 47547450 | 47548417 | - | 0.00006643 | chr3:47548299-47548879 | Epigenome browser | Genome browser |
| chr2 | 3202302 | 3203296 | - | 0.01316 | chr2:3201020-3202336 | Epigenome browser | Genome browser |
| chr8 | 145985147 | 145986214 | + | 0.00001022 | chr8:145986184-145986756 | Epigenome browser | Genome browser |
| chr4 | 62252711 | 62253777 | - | 0.00000001633 | chr4:62253711-62254835 | Epigenome browser | Genome browser |
| chr9 | 95516861 | 95517931 | + | 0.0001023 | chr9:95517759-95518286 | Epigenome browser | Genome browser |
| chr21 | 47395550 | 47396620 | - | 0.04269 | chr21:47396467-47397721 | Epigenome browser | Genome browser |
| chr17 | 73041096 | 73042148 | - | 0.009639 | chr17:73040452-73041193 | Epigenome browser | Genome browser |
| chr6 | 57383837 | 57384902 | - | 0.0000001788 | chr6:57384716-57386432 | Epigenome browser | Genome browser |
| chr12 | 121717930 | 121719007 | + | 0.0001745 | chr12:121718786-121719931 | Epigenome browser | Genome browser |
| chr22 | 24297742 | 24298813 | + | 0.0445 | chr22:24296691-24297751 | Epigenome browser | Genome browser |
| chr7 | 150219810 | 150220881 | - | 0.000006658 | chr7:150220751-150221595 | Epigenome browser | Genome browser |
| chr7 | 97503237 | 97503995 | - | 0.005064 | chr7:97502607-97503380 | Epigenome browser | Genome browser |
| chr18 | 43337478 | 43338546 | - | 0.000003467 | chr18:43338389-43339125 | Epigenome browser | Genome browser |
| chr7 | 105337250 | 105338317 | - | 0.00000008176 | chr7:105338003-105338844 | Epigenome browser | Genome browser |
| chr1 | 5826930 | 5827966 | - | 0.01086 | chr1:5827449-5829162 | Epigenome browser | Genome browser |
| chr1 | 44306170 | 44306476 | + | 0.006773 | chr1:44306316-44307313 | Epigenome browser | Genome browser |
| chr4 | 6118933 | 6120008 | - | 0.03004 | chr4:6119850-6120930 | Epigenome browser | Genome browser |
| chr2 | 232240578 | 232241655 | + | 0.0005445 | chr2:232241619-232242694 | Epigenome browser | Genome browser |