Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR8 | LTR | 3508 | 2.19E-06 | 4.359e-07 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 1564171 | 13177 | 0.01685 |
Found 76 LTR8 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr19 | 46081259 | 46081802 | + | 0.03199 | chr19:46079466-46081351 | Epigenome browser | Genome browser |
chr6 | 16235792 | 16236541 | - | 0.01167 | chr6:16235823-16236895 | Epigenome browser | Genome browser |
chr7 | 45028261 | 45028973 | - | 0.0007996 | chr7:45028882-45030160 | Epigenome browser | Genome browser |
chr17 | 76370135 | 76370798 | + | 0.0001192 | chr17:76369261-76374530 | Epigenome browser | Genome browser |
chr14 | 21289807 | 21290503 | - | 0.0004095 | chr14:21289644-21290545 | Epigenome browser | Genome browser |
chr8 | 29400405 | 29400810 | + | 0.0007271 | chr8:29400025-29401418 | Epigenome browser | Genome browser |
chr4 | 99945562 | 99945976 | - | 0.00006685 | chr4:99944582-99947298 | Epigenome browser | Genome browser |
chr14 | 74958384 | 74959045 | + | 0.001543 | chr14:74956006-74958890 | Epigenome browser | Genome browser |
chr8 | 143758112 | 143758259 | - | 0.0000005995 | chr8:143757732-143759052 | Epigenome browser | Genome browser |
chr2 | 77755630 | 77756359 | - | 0.0331 | chr2:77755486-77756646 | Epigenome browser | Genome browser |
chr8 | 1709791 | 1710325 | - | 0.004908 | chr8:1710138-1711150 | Epigenome browser | Genome browser |
chr8 | 52892228 | 52892965 | + | 0.00003594 | chr8:52892124-52893218 | Epigenome browser | Genome browser |
chr7 | 16458891 | 16459658 | + | 0.03534 | chr7:16458544-16459842 | Epigenome browser | Genome browser |
chr1 | 96991719 | 96992174 | + | 0.000003165 | chr1:96990955-96993080 | Epigenome browser | Genome browser |
chr20 | 49875821 | 49876530 | + | 0.00018 | chr20:49875068-49877002 | Epigenome browser | Genome browser |
chr4 | 99944945 | 99945102 | - | 0.01779 | chr4:99944582-99947298 | Epigenome browser | Genome browser |
chr2 | 120147032 | 120147727 | - | 0.0004635 | chr2:120146528-120147596 | Epigenome browser | Genome browser |
chr19 | 58331454 | 58332182 | - | 0.0004324 | chr19:58331661-58332933 | Epigenome browser | Genome browser |
chr17 | 55050930 | 55051487 | - | 0.000002104 | chr17:55050599-55051743 | Epigenome browser | Genome browser |
chr6 | 33343775 | 33344066 | - | 0.00000007907 | chr6:33339871-33344394 | Epigenome browser | Genome browser |
chr5 | 37661565 | 37662270 | - | 0.000474 | chr5:37661225-37662147 | Epigenome browser | Genome browser |
chr2 | 120459186 | 120459888 | - | 0.02091 | chr2:120457216-120460729 | Epigenome browser | Genome browser |
chr1 | 167136735 | 167137380 | - | 0.04787 | chr1:167137232-167138233 | Epigenome browser | Genome browser |
chr12 | 31886720 | 31887222 | - | 0.04387 | chr12:31886126-31887724 | Epigenome browser | Genome browser |
chr22 | 31545648 | 31546376 | + | 0.0002106 | chr22:31544094-31545659 | Epigenome browser | Genome browser |
chr11 | 77349050 | 77349602 | + | 0.0283 | chr11:77348859-77349849 | Epigenome browser | Genome browser |
chr9 | 38186604 | 38186845 | - | 0.00003732 | chr9:38186006-38187486 | Epigenome browser | Genome browser |
chr7 | 36699381 | 36699398 | - | 0.0145 | chr7:36697394-36700015 | Epigenome browser | Genome browser |
chr16 | 18972847 | 18972913 | - | 0.04407 | chr16:18971522-18973866 | Epigenome browser | Genome browser |
chr3 | 128597251 | 128597725 | + | 0.04329 | chr3:128596202-128597673 | Epigenome browser | Genome browser |
chr5 | 1118209 | 1118450 | + | 0.0000000218 | chr5:1117490-1120267 | Epigenome browser | Genome browser |
chr13 | 52732934 | 52733093 | + | 0.01421 | chr13:52732195-52733165 | Epigenome browser | Genome browser |
chr19 | 58426875 | 58427581 | + | 0.00000007797 | chr19:58425820-58427541 | Epigenome browser | Genome browser |
chr18 | 33547932 | 33548400 | - | 0.02797 | chr18:33548147-33549070 | Epigenome browser | Genome browser |
chr2 | 110401895 | 110402016 | + | 0.000001535 | chr2:110401628-110403125 | Epigenome browser | Genome browser |
chr11 | 104836216 | 104836943 | + | 0.0004961 | chr11:104835735-104837635 | Epigenome browser | Genome browser |
chr1 | 31644009 | 31644211 | + | 0.002877 | chr1:31643349-31644023 | Epigenome browser | Genome browser |
chr3 | 128596730 | 128596915 | - | 0.002525 | chr3:128596202-128597673 | Epigenome browser | Genome browser |
chr17 | 8284013 | 8284710 | + | 0.00000002775 | chr17:8282351-8285605 | Epigenome browser | Genome browser |
chr7 | 765148 | 765833 | + | 0.0004608 | chr7:765177-766269 | Epigenome browser | Genome browser |
chr12 | 48356295 | 48357013 | - | 0.0003858 | chr12:48356496-48357153 | Epigenome browser | Genome browser |
chr10 | 64865724 | 64866416 | + | 0.005637 | chr10:64865846-64866794 | Epigenome browser | Genome browser |
chr3 | 128597053 | 128597230 | + | 0.001457 | chr3:128596202-128597673 | Epigenome browser | Genome browser |
chr6 | 33343300 | 33343468 | - | 0.0001617 | chr6:33339871-33344394 | Epigenome browser | Genome browser |
chr7 | 127899673 | 127900131 | - | 0.000002801 | chr7:127899044-127900114 | Epigenome browser | Genome browser |
chr1 | 111779322 | 111780040 | - | 0.02604 | chr1:111778736-111780101 | Epigenome browser | Genome browser |
chr22 | 24592394 | 24592841 | + | 0.00008889 | chr22:24591834-24593022 | Epigenome browser | Genome browser |
chr7 | 140371905 | 140372555 | - | 0.0002154 | chr7:140371411-140372572 | Epigenome browser | Genome browser |
chr10 | 73680424 | 73681115 | - | 0.00324 | chr10:73678843-73682489 | Epigenome browser | Genome browser |
chr10 | 43851275 | 43851818 | - | 0.007553 | chr10:43850753-43852273 | Epigenome browser | Genome browser |
chr2 | 96874970 | 96875633 | + | 0.00004509 | chr2:96874874-96875855 | Epigenome browser | Genome browser |
chr13 | 99137364 | 99138033 | - | 0.0001112 | chr13:99134911-99138575 | Epigenome browser | Genome browser |
chr15 | 24512983 | 24513636 | + | 0.001419 | chr15:24513433-24515288 | Epigenome browser | Genome browser |
chr18 | 56158340 | 56159050 | + | 0.003709 | chr18:56154863-56160861 | Epigenome browser | Genome browser |
chr3 | 58021931 | 58022638 | - | 0.000007621 | chr3:58020776-58022693 | Epigenome browser | Genome browser |
chr5 | 1117403 | 1117905 | + | 0.00000000005962 | chr5:1117490-1120267 | Epigenome browser | Genome browser |
chr19 | 46084941 | 46085054 | - | 0.007662 | chr19:46084055-46085094 | Epigenome browser | Genome browser |
chr6 | 10760271 | 10760632 | + | 0.0002232 | chr6:10759752-10761113 | Epigenome browser | Genome browser |
chr5 | 138721300 | 138721991 | + | 0.00004547 | chr5:138719046-138722250 | Epigenome browser | Genome browser |
chr19 | 58361580 | 58361958 | - | 0.001039 | chr19:58361773-58362972 | Epigenome browser | Genome browser |
chr16 | 1472189 | 1472557 | + | 0.0000005447 | chr16:1471985-1472849 | Epigenome browser | Genome browser |
chr10 | 86572662 | 86573331 | - | 0.00003012 | chr10:86572471-86573167 | Epigenome browser | Genome browser |
chrX | 942246 | 942836 | + | 0.004485 | chrX:941830-942906 | Epigenome browser | Genome browser |
chr6 | 158263431 | 158264154 | - | 0.01558 | chr6:158263085-158263965 | Epigenome browser | Genome browser |
chr11 | 77753120 | 77753262 | + | 0.02433 | chr11:77748072-77754150 | Epigenome browser | Genome browser |
chr12 | 93642528 | 93643137 | - | 0.007782 | chr12:93642493-93643766 | Epigenome browser | Genome browser |
chr13 | 99186521 | 99187249 | + | 0.0006636 | chr13:99185913-99187101 | Epigenome browser | Genome browser |
chr11 | 113184074 | 113184790 | + | 0.004323 | chr11:113181861-113185170 | Epigenome browser | Genome browser |
chr1 | 96992206 | 96992473 | + | 0.0002116 | chr1:96990955-96993080 | Epigenome browser | Genome browser |
chr1 | 55416815 | 55417546 | - | 0.0001589 | chr1:55415542-55417370 | Epigenome browser | Genome browser |
chr10 | 47057034 | 47057779 | - | 0.00000003528 | chr10:47053710-47059270 | Epigenome browser | Genome browser |
chr1 | 117542653 | 117543371 | - | 0.02388 | chr1:117542187-117543592 | Epigenome browser | Genome browser |
chr1 | 52472884 | 52473569 | - | 0.001858 | chr1:52473015-52473801 | Epigenome browser | Genome browser |
chr6 | 158265181 | 158265619 | - | 0.0005554 | chr6:158264785-158265658 | Epigenome browser | Genome browser |
chr1 | 201486845 | 201487297 | + | 0.000000108 | chr1:201486480-201487266 | Epigenome browser | Genome browser |
chr19 | 52407084 | 52407116 | + | 0.03884 | chr19:52406202-52407277 | Epigenome browser | Genome browser |