Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR7C | LTR | 312 | 7.52E-08 | 2.413e-05 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 125648 | 1537 | 0.02447 |
Found 11 LTR7C transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr11 | 102782684 | 102783124 | + | 0.001955 | chr11:102782385-102783264 | Epigenome browser | Genome browser |
| chr14 | 50495238 | 50495656 | + | 0.02492 | chr14:50492503-50495717 | Epigenome browser | Genome browser |
| chr12 | 128504397 | 128504866 | - | 0.001709 | chr12:128503962-128507681 | Epigenome browser | Genome browser |
| chr2 | 218197504 | 218197933 | - | 0.00007101 | chr2:218196443-218198620 | Epigenome browser | Genome browser |
| chr8 | 90768067 | 90768501 | + | 0.001033 | chr8:90767796-90769310 | Epigenome browser | Genome browser |
| chr1 | 104930828 | 104931261 | + | 0.009325 | chr1:104930602-104931292 | Epigenome browser | Genome browser |
| chr2 | 9616613 | 9617042 | - | 0.008814 | chr2:9615517-9616972 | Epigenome browser | Genome browser |
| chr11 | 69903572 | 69903969 | - | 0.02765 | chr11:69903296-69904160 | Epigenome browser | Genome browser |
| chr19 | 46706233 | 46706643 | - | 0.009422 | chr19:46703794-46708008 | Epigenome browser | Genome browser |
| chr2 | 71358632 | 71359102 | - | 0.0001504 | chr2:71358268-71360088 | Epigenome browser | Genome browser |
| chr19 | 15939548 | 15940010 | + | 0.0001338 | chr19:15938858-15940595 | Epigenome browser | Genome browser |