Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR77 | LTR | 148 | 3.66E-09 | 1.603e-09 | Blood |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 63251 | 448 | 0.01417 |
Found 16 LTR77 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr12 | 48728553 | 48729134 | + | 0.01617 | chr12:48728332-48729623 | Epigenome browser | Genome browser |
chr1 | 194258750 | 194259334 | + | 0.00000000243 | chr1:194257833-194261062 | Epigenome browser | Genome browser |
chr14 | 66104353 | 66104961 | - | 0.005746 | chr14:66102475-66105559 | Epigenome browser | Genome browser |
chr4 | 300172 | 300769 | - | 0.0000005915 | chr4:299827-301161 | Epigenome browser | Genome browser |
chr12 | 31985553 | 31986164 | - | 0.00000003853 | chr12:31982863-31987041 | Epigenome browser | Genome browser |
chr7 | 14486437 | 14487031 | + | 0.0000000002082 | chr7:14485931-14488091 | Epigenome browser | Genome browser |
chr5 | 96152026 | 96152647 | + | 0.000000000001879 | chr5:96143959-96155729 | Epigenome browser | Genome browser |
chr4 | 121390 | 121846 | + | 0.0000003209 | chr4:120053-122597 | Epigenome browser | Genome browser |
chr16 | 10455982 | 10456428 | - | 0.00000006027 | chr16:10455061-10457696 | Epigenome browser | Genome browser |
chr4 | 16124390 | 16124734 | - | 0.00000002822 | chr4:16123539-16126131 | Epigenome browser | Genome browser |
chr4 | 204893 | 205486 | + | 0.00000000001762 | chr4:204162-206990 | Epigenome browser | Genome browser |
chr1 | 9000042 | 9000196 | + | 0.01413 | chr1:8997359-9001280 | Epigenome browser | Genome browser |
chr21 | 25294276 | 25294876 | + | 0.0000000007007 | chr21:25293818-25295220 | Epigenome browser | Genome browser |
chr5 | 80587671 | 80588293 | - | 0.001151 | chr5:80587237-80588656 | Epigenome browser | Genome browser |
chr11 | 59040892 | 59041521 | + | 0.001078 | chr11:59038934-59042746 | Epigenome browser | Genome browser |
chr4 | 378129 | 378727 | + | 0.00000000000004506 | chr4:377694-379538 | Epigenome browser | Genome browser |