Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR72 | LTR | 150 | 4.06E-07 | 2.532e-08 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 54704 | 568 | 0.02077 |
Found 3 LTR72 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr7 | 87770163 | 87770613 | - | 0.00002985 | chr7:87769652-87771142 | Epigenome browser | Genome browser |
| chr16 | 15490857 | 15491360 | - | 0.00245 | chr16:15490087-15491047 | Epigenome browser | Genome browser |
| chr13 | 98100971 | 98101437 | - | 0.005489 | chr13:98100789-98102265 | Epigenome browser | Genome browser |