Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR71A | LTR | 166 | 1.05E-07 | 4.126e-06 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 64350 | 934 | 0.02903 |
Found 2 LTR71A transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr3 | 46152553 | 46153007 | - | 0.001222 | chr3:46152041-46153057 | Epigenome browser | Genome browser |
| chr16 | 89490156 | 89490575 | + | 0.04391 | chr16:89488712-89490614 | Epigenome browser | Genome browser |