Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR6A | LTR | 264 | 5.09E-10 | 1.677e-07 | H1ES |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 132673 | 2378 | 0.03585 |
Found 10 LTR6A transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr12 | 110339169 | 110339732 | + | 0.002056 | chr12:110338297-110339337 | Epigenome browser | Genome browser |
| chr2 | 101955389 | 101956034 | - | 0.03025 | chr2:101954850-101955671 | Epigenome browser | Genome browser |
| chr19 | 17525949 | 17526582 | + | 0.008158 | chr19:17526543-17527223 | Epigenome browser | Genome browser |
| chr17 | 80132230 | 80132875 | + | 0.00009967 | chr17:80132692-80133697 | Epigenome browser | Genome browser |
| chr3 | 47883559 | 47884208 | + | 0.009132 | chr3:47883899-47885052 | Epigenome browser | Genome browser |
| chr11 | 62329211 | 62329853 | + | 0.009834 | chr11:62329722-62331077 | Epigenome browser | Genome browser |
| chr15 | 45764452 | 45765098 | + | 0.03025 | chr15:45763955-45764472 | Epigenome browser | Genome browser |
| chr10 | 82176693 | 82177341 | - | 0.008606 | chr10:82176198-82176906 | Epigenome browser | Genome browser |
| chr2 | 113609503 | 113610045 | - | 0.001859 | chr2:113609115-113609721 | Epigenome browser | Genome browser |
| chr1 | 158975920 | 158976529 | - | 0.01464 | chr1:158976499-158977690 | Epigenome browser | Genome browser |