Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR64 | LTR | 358 | 6.40E-08 | 1.316e-05 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 109735 | 1147 | 0.0209 |
Found 8 LTR64 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr11 | 101752149 | 101752641 | - | 0.004281 | chr11:101751719-101753019 | Epigenome browser | Genome browser |
| chr16 | 70632660 | 70633149 | - | 0.000003023 | chr16:70631960-70633176 | Epigenome browser | Genome browser |
| chr14 | 105594450 | 105594640 | + | 0.04515 | chr14:105593725-105595084 | Epigenome browser | Genome browser |
| chr6 | 77480234 | 77480722 | + | 0.03977 | chr6:77480243-77481433 | Epigenome browser | Genome browser |
| chr1 | 120216524 | 120217022 | - | 0.01066 | chr1:120214974-120218983 | Epigenome browser | Genome browser |
| chr14 | 23756264 | 23756441 | + | 0.02942 | chr14:23756042-23756641 | Epigenome browser | Genome browser |
| chr17 | 39873118 | 39873463 | - | 0.009461 | chr17:39872631-39873262 | Epigenome browser | Genome browser |
| chr18 | 9016732 | 9016917 | - | 0.000174 | chr18:9016380-9017299 | Epigenome browser | Genome browser |