Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR62 | LTR | 315 | 3.77E-05 | 3.839e-06 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVL | 133906 | 1282 | 0.01915 |
Found 11 LTR62 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr11 | 130048288 | 130048342 | - | 0.00000004251 | chr11:130047857-130050547 | Epigenome browser | Genome browser |
chr11 | 130047792 | 130048289 | - | 0.00000000474 | chr11:130047857-130050547 | Epigenome browser | Genome browser |
chr3 | 141030887 | 141031577 | - | 0.00000001872 | chr3:141030846-141032281 | Epigenome browser | Genome browser |
chr7 | 157104066 | 157104150 | + | 0.03151 | chr7:157103594-157104409 | Epigenome browser | Genome browser |
chr12 | 8749227 | 8749937 | + | 0.00632 | chr12:8749770-8750346 | Epigenome browser | Genome browser |
chr14 | 91735483 | 91735562 | + | 0.009932 | chr14:91735399-91736606 | Epigenome browser | Genome browser |
chr15 | 89545158 | 89545376 | - | 0.03724 | chr15:89544513-89546762 | Epigenome browser | Genome browser |
chr7 | 157103737 | 157103780 | + | 0.01564 | chr7:157103594-157104409 | Epigenome browser | Genome browser |
chr17 | 17321191 | 17321863 | + | 0.00138 | chr17:17321622-17323867 | Epigenome browser | Genome browser |
chr4 | 185571150 | 185571764 | - | 0.0001105 | chr4:185570854-185572123 | Epigenome browser | Genome browser |
chr8 | 8172320 | 8172989 | + | 0.0489 | chr8:8172546-8173300 | Epigenome browser | Genome browser |