Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR60 | LTR | 265 | 7.11E-08 | 1.605e-06 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 81698 | 705 | 0.01726 |
Found 2 LTR60 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr12 | 127785275 | 127785833 | - | 0.000000005242 | chr12:127785111-127786281 | Epigenome browser | Genome browser |
| chr4 | 187475736 | 187475773 | - | 0.006835 | chr4:187475312-187476176 | Epigenome browser | Genome browser |