Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR58 | LTR | 76 | 1.39E-06 | 4.517e-08 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 27147 | 263 | 0.01938 |
Found 3 LTR58 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr5 | 149144697 | 149144867 | - | 0.000008441 | chr5:149144369-149145305 | Epigenome browser | Genome browser |
| chr13 | 110709015 | 110709666 | + | 0.01572 | chr13:110708858-110709962 | Epigenome browser | Genome browser |
| chr12 | 61582470 | 61583080 | + | 0.00001154 | chr12:61582659-61583255 | Epigenome browser | Genome browser |