Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR57 | LTR | 246 | 5.97E-06 | 4.179e-08 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERVL | 84404 | 793 | 0.01879 |
Found 3 LTR57 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr7 | 153085895 | 153086309 | + | 0.01819 | chr7:153085384-153086892 | Epigenome browser | Genome browser |
| chr14 | 51011690 | 51012087 | + | 0.00001632 | chr14:51011784-51012652 | Epigenome browser | Genome browser |
| chr17 | 43120762 | 43121156 | + | 0.0031 | chr17:43114874-43124712 | Epigenome browser | Genome browser |