Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR46-int | LTR | 77 | 8.31E-07 | 1.885e-08 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 105133 | 903 | 0.01718 |
Found 2 LTR46-int transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr17 | 42007087 | 42007627 | - | 0.0001264 | chr17:42006660-42007546 | Epigenome browser | Genome browser |
| chr9 | 121403296 | 121403513 | + | 0.02637 | chr9:121402505-121404485 | Epigenome browser | Genome browser |