Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR46 | LTR | 252 | 4.91E-09 | 3.637e-11 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 79329 | 1206 | 0.03041 |
Found 7 LTR46 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr19 | 46975440 | 46975921 | + | 0.001126 | chr19:46974686-46976458 | Epigenome browser | Genome browser |
| chr22 | 24254113 | 24254307 | + | 0.005893 | chr22:24252573-24254364 | Epigenome browser | Genome browser |
| chr17 | 78387492 | 78387880 | + | 0.0000006665 | chr17:78387106-78388614 | Epigenome browser | Genome browser |
| chr1 | 40166657 | 40167072 | - | 0.00446 | chr1:40166601-40167740 | Epigenome browser | Genome browser |
| chr10 | 79534938 | 79535352 | + | 0.02078 | chr10:79533571-79535962 | Epigenome browser | Genome browser |
| chr9 | 121403514 | 121403945 | + | 0.0002425 | chr9:121402505-121404485 | Epigenome browser | Genome browser |
| chr6 | 65393640 | 65393986 | + | 0.0001016 | chr6:65393255-65394259 | Epigenome browser | Genome browser |