Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR43B | LTR | 219 | 7.80E-06 | 4.37e-07 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 75833 | 774 | 0.02041 |
Found 7 LTR43B transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr19 | 2953012 | 2953322 | + | 0.0000000008756 | chr19:2951507-2953095 | Epigenome browser | Genome browser |
| chr16 | 62287908 | 62288247 | + | 0.01413 | chr16:62288038-62289102 | Epigenome browser | Genome browser |
| chr12 | 131856342 | 131856704 | - | 0.000001234 | chr12:131856425-131857141 | Epigenome browser | Genome browser |
| chr20 | 1451378 | 1451772 | + | 0.0003028 | chr20:1451223-1452069 | Epigenome browser | Genome browser |
| chr7 | 7369618 | 7370194 | - | 0.004185 | chr7:7366831-7370430 | Epigenome browser | Genome browser |
| chr19 | 51697882 | 51698425 | - | 0.00000004428 | chr19:51697669-51698387 | Epigenome browser | Genome browser |
| chr20 | 46792078 | 46792603 | + | 0.004992 | chr20:46792218-46793302 | Epigenome browser | Genome browser |