Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR42 | LTR | 288 | 4.04E-10 | 2.147e-13 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVL | 109959 | 1045 | 0.01901 |
Found 24 LTR42 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr19 | 4708046 | 4708505 | + | 0.0000000006208 | chr19:4703671-4714979 | Epigenome browser | Genome browser |
chr1 | 191497518 | 191497835 | + | 0.0000005173 | chr1:191497120-191497704 | Epigenome browser | Genome browser |
chr1 | 228292057 | 228292545 | + | 0.000004149 | chr1:228291212-228292671 | Epigenome browser | Genome browser |
chr4 | 87259238 | 87259714 | + | 0.001759 | chr4:87258902-87260114 | Epigenome browser | Genome browser |
chr1 | 227924523 | 227924855 | - | 0.000000002961 | chr1:227923583-227924612 | Epigenome browser | Genome browser |
chr9 | 138157034 | 138157295 | + | 0.0003617 | chr9:138156447-138158088 | Epigenome browser | Genome browser |
chr21 | 46710943 | 46711375 | - | 0.00000801 | chr21:46711037-46711645 | Epigenome browser | Genome browser |
chr12 | 104575983 | 104576464 | + | 0.0000000001244 | chr12:104574026-104576779 | Epigenome browser | Genome browser |
chr9 | 131266175 | 131266510 | - | 0.0000004515 | chr9:131265748-131266487 | Epigenome browser | Genome browser |
chr6 | 170851460 | 170851885 | + | 0.00006257 | chr6:170851341-170852371 | Epigenome browser | Genome browser |
chr9 | 131265854 | 131265888 | - | 0.00001936 | chr9:131265748-131266487 | Epigenome browser | Genome browser |
chr3 | 52414789 | 52415106 | - | 0.006261 | chr3:52412916-52415107 | Epigenome browser | Genome browser |
chr20 | 62337105 | 62337555 | + | 0.01344 | chr20:62336114-62338160 | Epigenome browser | Genome browser |
chr17 | 43122477 | 43122607 | - | 0.001034 | chr17:43114874-43124712 | Epigenome browser | Genome browser |
chr1 | 227924076 | 227924208 | - | 0.0155 | chr1:227923583-227924612 | Epigenome browser | Genome browser |
chr19 | 35800483 | 35800661 | - | 0.0000004465 | chr19:35799758-35801174 | Epigenome browser | Genome browser |
chr14 | 39902970 | 39903005 | + | 0.0001104 | chr14:39902661-39903275 | Epigenome browser | Genome browser |
chr12 | 53066905 | 53067420 | - | 0.000001785 | chr12:53065998-53069061 | Epigenome browser | Genome browser |
chr3 | 86224081 | 86224562 | + | 0.001313 | chr3:86224071-86224743 | Epigenome browser | Genome browser |
chr6 | 158800299 | 158800802 | - | 0.008915 | chr6:158792493-158802511 | Epigenome browser | Genome browser |
chr2 | 129503920 | 129504277 | - | 0.01615 | chr2:129503524-129504636 | Epigenome browser | Genome browser |
chr21 | 40762098 | 40762574 | - | 0.0000006796 | chr21:40759992-40762899 | Epigenome browser | Genome browser |
chr3 | 24035383 | 24035892 | - | 0.00001375 | chr3:24034889-24036033 | Epigenome browser | Genome browser |
chr19 | 35800044 | 35800365 | - | 0.000579 | chr19:35799758-35801174 | Epigenome browser | Genome browser |