Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR3B | LTR | 90 | 5.80E-07 | 3.229e-07 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERVK | 36069 | 464 | 0.02573 |
Found 9 LTR3B transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr4 | 95453353 | 95453858 | - | 0.002686 | chr4:95453497-95454440 | Epigenome browser | Genome browser |
| chr5 | 10366581 | 10367074 | - | 0.0004378 | chr5:10365842-10367484 | Epigenome browser | Genome browser |
| chr16 | 30635166 | 30635602 | - | 0.000006185 | chr16:30633214-30636024 | Epigenome browser | Genome browser |
| chr20 | 43717058 | 43717554 | + | 0.0001172 | chr20:43716195-43717762 | Epigenome browser | Genome browser |
| chr1 | 210516324 | 210516817 | + | 0.0000006095 | chr1:210516697-210517947 | Epigenome browser | Genome browser |
| chr7 | 67402960 | 67403456 | + | 0.001017 | chr7:67402213-67403262 | Epigenome browser | Genome browser |
| chr12 | 95777758 | 95778256 | + | 0.02863 | chr12:95777753-95780165 | Epigenome browser | Genome browser |
| chr4 | 39540876 | 39541301 | - | 0.0001236 | chr4:39540744-39541856 | Epigenome browser | Genome browser |
| chr12 | 7417719 | 7418142 | - | 0.001784 | chr12:7417192-7418153 | Epigenome browser | Genome browser |