Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR38B | LTR | 229 | 8.78E-08 | 6.359e-08 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 86602 | 758 | 0.01751 |
Found 5 LTR38B transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr1 | 52832930 | 52833424 | - | 0.0003402 | chr1:52832762-52833998 | Epigenome browser | Genome browser |
chr21 | 27368805 | 27369350 | + | 0.004636 | chr21:27368926-27372282 | Epigenome browser | Genome browser |
chr2 | 26562401 | 26562975 | + | 0.02294 | chr2:26562084-26563188 | Epigenome browser | Genome browser |
chr19 | 38963055 | 38963235 | - | 0.003773 | chr19:38962825-38964268 | Epigenome browser | Genome browser |
chr14 | 77280027 | 77280436 | + | 0.02039 | chr14:77280411-77281716 | Epigenome browser | Genome browser |