Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR38-int | LTR | 123 | 8.32E-06 | 4.852e-05 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 38164 | 192 | 0.01006 |
Found 2 LTR38-int transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr14 | 45681557 | 45681604 | + | 0.0003549 | chr14:45679936-45681723 | Epigenome browser | Genome browser |
chr14 | 21223340 | 21223816 | + | 0.00001706 | chr14:21221454-21224077 | Epigenome browser | Genome browser |