Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR38 | LTR | 309 | 1.95E-09 | 2.207e-09 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 120368 | 987 | 0.0164 |
Found 4 LTR38 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr4 | 131771001 | 131771568 | + | 0.0003682 | chr4:131771045-131771840 | Epigenome browser | Genome browser |
| chr3 | 25511280 | 25511815 | - | 0.00003122 | chr3:25510799-25515518 | Epigenome browser | Genome browser |
| chr6 | 148059153 | 148059684 | - | 0.00000009886 | chr6:148058842-148060874 | Epigenome browser | Genome browser |
| chr4 | 90043691 | 90044065 | + | 0.003569 | chr4:90043503-90044356 | Epigenome browser | Genome browser |