Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR35A | LTR | 89 | 1.78E-09 | 2.769e-10 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 30841 | 254 | 0.01647 |
Found 8 LTR35A transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr2 | 97074580 | 97074705 | + | 0.002622 | chr2:97072541-97074860 | Epigenome browser | Genome browser |
chr2 | 64630302 | 64630850 | - | 0.04164 | chr2:64629783-64632447 | Epigenome browser | Genome browser |
chr9 | 134242128 | 134242692 | + | 0.03786 | chr9:134241909-134242933 | Epigenome browser | Genome browser |
chr1 | 26336515 | 26336878 | - | 0.002557 | chr1:26336355-26337217 | Epigenome browser | Genome browser |
chr7 | 76053192 | 76053241 | - | 0.008153 | chr7:76053069-76054833 | Epigenome browser | Genome browser |
chr1 | 26337186 | 26337335 | - | 0.04071 | chr1:26336355-26337217 | Epigenome browser | Genome browser |
chr17 | 20163897 | 20164525 | - | 0.00001021 | chr17:20163171-20164304 | Epigenome browser | Genome browser |
chr11 | 61137431 | 61138033 | - | 0.000009344 | chr11:61137245-61139214 | Epigenome browser | Genome browser |