Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR30 | LTR | 139 | 2.32E-06 | 1.578e-05 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 88832 | 1443 | 0.03249 |
Found 2 LTR30 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr10 | 54784934 | 54785648 | - | 0.02824 | chr10:54784420-54785115 | Epigenome browser | Genome browser |
| chr6 | 68750114 | 68750823 | - | 0.002024 | chr6:68750457-68751179 | Epigenome browser | Genome browser |