Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR2B | LTR | 320 | 6.30E-06 | 0.2485 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 147555 | 2822 | 0.03825 |
Found 16 LTR2B transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr1 | 1353758 | 1354232 | - | 0.0006279 | chr1:1353329-1355315 | Epigenome browser | Genome browser |
| chr18 | 21544839 | 21545312 | + | 0.0178 | chr18:21544334-21545996 | Epigenome browser | Genome browser |
| chr18 | 72167902 | 72168380 | - | 0.00504 | chr18:72167653-72168756 | Epigenome browser | Genome browser |
| chr3 | 112125956 | 112126432 | - | 0.04766 | chr3:112124810-112126598 | Epigenome browser | Genome browser |
| chr13 | 49165574 | 49166054 | - | 0.0002724 | chr13:49165152-49166005 | Epigenome browser | Genome browser |
| chr5 | 138905451 | 138905931 | + | 0.01416 | chr5:138904823-138906591 | Epigenome browser | Genome browser |
| chr8 | 107512407 | 107512888 | + | 0.04313 | chr8:107512359-107514873 | Epigenome browser | Genome browser |
| chr19 | 53426875 | 53427374 | + | 0.000000000001197 | chr19:53427048-53427931 | Epigenome browser | Genome browser |
| chr3 | 162426707 | 162427178 | - | 0.00003021 | chr3:162426532-162427209 | Epigenome browser | Genome browser |
| chr7 | 134856016 | 134856493 | + | 0.00005324 | chr7:134855703-134857436 | Epigenome browser | Genome browser |
| chr5 | 77053977 | 77054440 | + | 0.000009648 | chr5:77053967-77055999 | Epigenome browser | Genome browser |
| chr4 | 94221813 | 94222294 | - | 0.008308 | chr4:94221430-94222191 | Epigenome browser | Genome browser |
| chr19 | 53238534 | 53238999 | + | 0.000001264 | chr19:53238433-53239174 | Epigenome browser | Genome browser |
| chr8 | 107099258 | 107099738 | - | 0.01146 | chr8:107098568-107100461 | Epigenome browser | Genome browser |
| chr10 | 85931743 | 85932221 | - | 0.03815 | chr10:85931012-85931866 | Epigenome browser | Genome browser |
| chr1 | 31955718 | 31956189 | - | 0.0018 | chr1:31955062-31956248 | Epigenome browser | Genome browser |