Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR22B | LTR | 220 | 8.13E-06 | 1.322e-06 | Brain |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVK | 102915 | 1173 | 0.0228 |
Found 2 LTR22B transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr16 | 87898206 | 87898672 | - | 0.001199 | chr16:87898343-87898648 | Epigenome browser | Genome browser |
chr16 | 21526832 | 21527314 | - | 0.008622 | chr16:21527209-21527500 | Epigenome browser | Genome browser |