Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR22A | LTR | 189 | 7.68E-08 | 5.227e-09 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVK | 76345 | 933 | 0.02444 |
Found 10 LTR22A transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr11 | 67360980 | 67361444 | + | 0.00001733 | chr11:67360136-67362024 | Epigenome browser | Genome browser |
chr17 | 80253519 | 80253842 | + | 0.000113 | chr17:80253830-80255354 | Epigenome browser | Genome browser |
chr16 | 66412834 | 66413199 | + | 0.00000884 | chr16:66412526-66413665 | Epigenome browser | Genome browser |
chr18 | 52274220 | 52274680 | - | 0.00007852 | chr18:52273990-52274922 | Epigenome browser | Genome browser |
chr1 | 26216790 | 26217243 | + | 0.00000498 | chr1:26215975-26218806 | Epigenome browser | Genome browser |
chr16 | 87412845 | 87413294 | + | 0.0009487 | chr16:87412718-87413525 | Epigenome browser | Genome browser |
chr4 | 59615441 | 59615777 | - | 0.00002443 | chr4:59614989-59615743 | Epigenome browser | Genome browser |
chr1 | 193365242 | 193365405 | - | 0.000000413 | chr1:193365292-193366333 | Epigenome browser | Genome browser |
chr17 | 80254142 | 80254276 | + | 0.02618 | chr17:80253830-80255354 | Epigenome browser | Genome browser |
chr1 | 203398281 | 203398710 | - | 0.000000009746 | chr1:203397335-203398674 | Epigenome browser | Genome browser |