Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR21B | LTR | 60 | 1.10E-06 | 1.693e-06 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 20690 | 314 | 0.03035 |
Found 2 LTR21B transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr6 | 11791502 | 11791983 | + | 0.0002043 | chr6:11790277-11792386 | Epigenome browser | Genome browser |
| chr1 | 89777393 | 89777835 | - | 0.005559 | chr1:89775842-89777944 | Epigenome browser | Genome browser |