Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR19A | LTR | 437 | 7.69E-12 | 6.515e-13 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 158897 | 1549 | 0.0195 |
Found 10 LTR19A transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr21 | 31519253 | 31519749 | - | 0.0003287 | chr21:31519255-31520099 | Epigenome browser | Genome browser |
| chr10 | 74648077 | 74648504 | + | 0.000001715 | chr10:74646012-74649183 | Epigenome browser | Genome browser |
| chr2 | 239180319 | 239180779 | + | 0.000000075 | chr2:239178732-239181355 | Epigenome browser | Genome browser |
| chr9 | 132357858 | 132358008 | - | 0.0168 | chr9:132357632-132358233 | Epigenome browser | Genome browser |
| chr7 | 55094103 | 55094559 | + | 0.000000007479 | chr7:55092425-55095674 | Epigenome browser | Genome browser |
| chr6 | 10760155 | 10760280 | - | 0.001058 | chr6:10759752-10761113 | Epigenome browser | Genome browser |
| chr17 | 5370739 | 5371247 | + | 0.004805 | chr17:5368858-5371152 | Epigenome browser | Genome browser |
| chr22 | 24602630 | 24603167 | - | 0.0116 | chr22:24602580-24603959 | Epigenome browser | Genome browser |
| chr22 | 24254309 | 24254856 | + | 0.0000007431 | chr22:24252573-24254364 | Epigenome browser | Genome browser |
| chr1 | 8686476 | 8686940 | + | 0.00000006028 | chr1:8685939-8687313 | Epigenome browser | Genome browser |