Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR18B | LTR | 387 | 3.79E-07 | 1.542e-07 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVL | 161900 | 2492 | 0.03078 |
Found 30 LTR18B transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chrX | 119362175 | 119362711 | + | 0.00000225 | chrX:119361950-119363316 | Epigenome browser | Genome browser |
chr14 | 55274223 | 55274468 | - | 0.01747 | chr14:55273890-55275003 | Epigenome browser | Genome browser |
chr1 | 191577528 | 191578089 | + | 0.0003718 | chr1:191576751-191578078 | Epigenome browser | Genome browser |
chr4 | 172563385 | 172563976 | + | 0.02081 | chr4:172563501-172564938 | Epigenome browser | Genome browser |
chr17 | 41433900 | 41434511 | + | 0.0000002928 | chr17:41433696-41435344 | Epigenome browser | Genome browser |
chr12 | 27904269 | 27904855 | - | 0.00002085 | chr12:27904261-27905491 | Epigenome browser | Genome browser |
chr4 | 70850058 | 70850267 | + | 0.0179 | chr4:70849590-70850309 | Epigenome browser | Genome browser |
chr2 | 38742579 | 38743115 | + | 0.000000000002823 | chr2:38741740-38743230 | Epigenome browser | Genome browser |
chr13 | 79881753 | 79882302 | + | 0.00000003466 | chr13:79881447-79882652 | Epigenome browser | Genome browser |
chr5 | 133580715 | 133581252 | - | 0.00003705 | chr5:133580600-133584648 | Epigenome browser | Genome browser |
chr8 | 130118957 | 130119137 | + | 0.0007513 | chr8:130116478-130119051 | Epigenome browser | Genome browser |
chr4 | 8343530 | 8343756 | - | 0.000001317 | chr4:8342061-8344067 | Epigenome browser | Genome browser |
chr7 | 90395995 | 90396623 | - | 0.000004422 | chr7:90395201-90397040 | Epigenome browser | Genome browser |
chrX | 119342348 | 119342820 | + | 0.03501 | chrX:119341474-119343338 | Epigenome browser | Genome browser |
chr15 | 85122327 | 85122940 | - | 0.0000004993 | chr15:85121662-85123715 | Epigenome browser | Genome browser |
chr14 | 46360738 | 46360934 | + | 0.000000002605 | chr14:46360069-46361882 | Epigenome browser | Genome browser |
chr3 | 49255354 | 49255809 | - | 0.003522 | chr3:49254934-49256179 | Epigenome browser | Genome browser |
chr3 | 49256112 | 49256283 | - | 0.001685 | chr3:49256277-49257651 | Epigenome browser | Genome browser |
chr6 | 27374908 | 27375502 | - | 0.01677 | chr6:27374410-27376581 | Epigenome browser | Genome browser |
chr6 | 70311006 | 70311583 | - | 0.00000001136 | chr6:70310988-70311905 | Epigenome browser | Genome browser |
chr2 | 28887096 | 28887595 | + | 0.00009429 | chr2:28886555-28891692 | Epigenome browser | Genome browser |
chr14 | 46361015 | 46361252 | + | 0.000003294 | chr14:46360069-46361882 | Epigenome browser | Genome browser |
chr20 | 42726029 | 42726619 | - | 0.00002389 | chr20:42725737-42727059 | Epigenome browser | Genome browser |
chr17 | 58635863 | 58636443 | - | 0.002119 | chr17:58635469-58638033 | Epigenome browser | Genome browser |
chr1 | 45731755 | 45732258 | - | 0.000000007098 | chr1:45730986-45732476 | Epigenome browser | Genome browser |
chr8 | 35763915 | 35764270 | - | 0.001691 | chr8:35763912-35764803 | Epigenome browser | Genome browser |
chr12 | 47285937 | 47286488 | + | 0.008146 | chr12:47285802-47286920 | Epigenome browser | Genome browser |
chr6 | 28321642 | 28322172 | - | 0.000004586 | chr6:28320147-28323847 | Epigenome browser | Genome browser |
chr8 | 35764424 | 35764609 | - | 0.0002995 | chr8:35763912-35764803 | Epigenome browser | Genome browser |
chr4 | 9924871 | 9925453 | + | 0.00004666 | chr4:9925064-9927398 | Epigenome browser | Genome browser |