Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR14B | LTR | 358 | 1.76E-08 | 2.811e-05 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERVK | 168118 | 2232 | 0.02655 |
Found 17 LTR14B transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr1 | 100408907 | 100409488 | + | 0.00001663 | chr1:100408516-100410528 | Epigenome browser | Genome browser |
chr15 | 89610294 | 89610921 | - | 0.01203 | chr15:89610509-89611426 | Epigenome browser | Genome browser |
chr11 | 121110849 | 121111203 | + | 0.0447 | chr11:121110143-121112210 | Epigenome browser | Genome browser |
chr1 | 205826692 | 205827304 | + | 0.003692 | chr1:205826274-205827467 | Epigenome browser | Genome browser |
chr5 | 178100700 | 178101296 | - | 0.001619 | chr5:178100127-178101586 | Epigenome browser | Genome browser |
chr19 | 38829558 | 38830134 | - | 0.03278 | chr19:38827772-38830346 | Epigenome browser | Genome browser |
chr6 | 158826309 | 158826884 | - | 0.000000002098 | chr6:158826226-158827637 | Epigenome browser | Genome browser |
chr21 | 20916741 | 20917321 | + | 0.00002605 | chr21:20916772-20917474 | Epigenome browser | Genome browser |
chr8 | 146004275 | 146004980 | + | 0.02404 | chr8:146004131-146005218 | Epigenome browser | Genome browser |
chr3 | 15405560 | 15406142 | + | 0.000002203 | chr3:15405215-15407287 | Epigenome browser | Genome browser |
chr2 | 98357286 | 98357711 | - | 0.0000005829 | chr2:98357025-98357859 | Epigenome browser | Genome browser |
chr10 | 419406 | 419990 | + | 0.01128 | chr10:419219-421129 | Epigenome browser | Genome browser |
chr1 | 225988491 | 225989093 | - | 0.003889 | chr1:225987060-225989120 | Epigenome browser | Genome browser |
chr12 | 10289324 | 10289883 | + | 0.002016 | chr12:10289105-10289835 | Epigenome browser | Genome browser |
chr6 | 107772504 | 107773109 | + | 0.00001389 | chr6:107772523-107773450 | Epigenome browser | Genome browser |
chr22 | 24270787 | 24271400 | + | 0.0000003969 | chr22:24270329-24271942 | Epigenome browser | Genome browser |
chr11 | 33067216 | 33067809 | - | 0.001007 | chr11:33066984-33068108 | Epigenome browser | Genome browser |